BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg925926

Length=851
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G66930.1 | Symbols:  | Protein kinase superfamily protein | ...   241    1e-62


> AT1G66930.1 | Symbols:  | Protein kinase superfamily protein 
| chr1:24970523-24973069 FORWARD LENGTH=2025
Length=2025

 Score =  241 bits (130),  Expect = 1e-62
 Identities = 168/187 (90%), Gaps = 0/187 (0%)
 Strand=Plus/Plus

Query  568  TGAATTTGACCCATTTGGAAAGTGCTCTACGAAATGGGTTTGAGGTGAAGCTGGTGATCG  627
            ||||| ||||||||||||||||||||||| |||| || ||||| ||||||||||||||||
Sbjct  2    TGAATCTGACCCATTTGGAAAGTGCTCTAAGAAAAGGTTTTGAAGTGAAGCTGGTGATCG  61

Query  628  ATGAGATACCGTGTCAAGAATGTTCATCCACTAGTGGAATTTGTGGTTTCAACAGTACCA  687
            |||||||||||||||||||||||||||||| | ||||||| |||||||||||||||||||
Sbjct  62   ATGAGATACCGTGTCAAGAATGTTCATCCAGTCGTGGAATCTGTGGTTTCAACAGTACCA  121

Query  688  CACAGATTTGCTGCAACGTAACCTCACCACCAGGACGAGATAGTTGCGTTCCACAACATA  747
            ||||||| |||||||||||||||||||   | ||  ||| || |||||| ||||||||| 
Sbjct  122  CACAGATATGCTGCAACGTAACCTCACTTTCTGGTGGAGTTACTTGCGTACCACAACATC  181

Query  748  AACCTAG  754
            |||||||
Sbjct  182  AACCTAG  188



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 41493405422


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5