BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg925928
Length=1747
Score E
Sequences producing significant alignments: (Bits) Value
AT4G11690.1 | Symbols: | Pentatricopeptide repeat (PPR-like) s... 2464 0.0
> AT4G11690.1 | Symbols: | Pentatricopeptide repeat (PPR-like)
superfamily protein | chr4:7056254-7057954 FORWARD LENGTH=1701
Length=1701
Score = 2464 bits (1334), Expect = 0.0
Identities = 1588/1710 (93%), Gaps = 19/1710 (1%)
Strand=Plus/Plus
Query 21 ATGGCGGCAAAATCCCAGAAAACCCTCATTCTACTAGC-AACTCTAATCAAGGTTCCTCC 79
||||||||||||||||||||||||||| |||| ||||| || | |||||||| |||||||
Sbjct 1 ATGGCGGCAAAATCCCAGAAAACCCTCGTTCTGCTAGCGAA-TTTAATCAAGTTTCCTCC 59
Query 80 ACTAAAAGCTTTCTCTCTCTTAAATTCTCCAAATTTCCATGGATTTCAACACACACACGA 139
| |||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 60 ATTAAAAGCTTTTTCTCTCTTAAATTCTCCAAATTTCCATGAATTTCAACACACACACGA 119
Query 140 ATCCATATCAATCCTTCTTCGTCTCCTTCTCTCTGGAAACTTATACTCTCACGCTCAATC 199
||| || ||||||||||||||||||||||||||||| ||||||| |||||||||||||||
Sbjct 120 ATCAATCTCAATCCTTCTTCGTCTCCTTCTCTCTGGGAACTTATTCTCTCACGCTCAATC 179
Query 200 ACTTCTCCTTCAAGTAATCTCCGGAAAGATCCAATCCCAATTCTTCACATCTTCCTCTCT 259
|||||| || ||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 180 ACTTCTTCTACAAGTAATCTCCGGAAAAATCCACTCCCAATTCTTCACATCTTCCTCTCT 239
Query 260 GCTACACTATGTGACAGAATCAGAAACGTCAGAAACCAAGTCTCGTCTCTACGAGGTAAT 319
| |||||||| |||||||||||||||||||| |||| |||| ||||||||||||||||||
Sbjct 240 GTTACACTATTTGACAGAATCAGAAACGTCAAAAACAAAGTTTCGTCTCTACGAGGTAAT 299
Query 320 GATCAATGCCTATGTTCAATCTCAATCCCTAGA-TTCCTCAATCTCTTACTTCAACGAAA 378
|||||| ||||||||||||||||||||||| | || ||||||||||||||||||||||
Sbjct 300 CATCAATTCCTATGTTCAATCTCAATCCCTAAACTT-ATCAATCTCTTACTTCAACGAAA 358
Query 379 TGGTCGATAAGGGTTTTGTTCCTGGATCGAATTGCTTCAACAATCTCTTAACTTTCGTTG 438
|||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 359 TGGTCGATAATGGTTTTGTTCCTGGATCGAATTGCTTCAACTATCTCTTAACTTTCGTTG 418
Query 439 TTGGGTCTTCTTCTTTCAATCAATGGTGGCGTTTCTTCAACGAGAGCAAAATCAAAGTTG 498
||||||| ||||||||||||||||||||| ||||||||||||||| ||||| ||||||||
Sbjct 419 TTGGGTCATCTTCTTTCAATCAATGGTGGAGTTTCTTCAACGAGAACAAAAGCAAAGTTG 478
Query 499 ATTTAGATGTGTATAGCTTTGGGATTGTGATCAAAGGTTGTTGTGAAGCTGGTGAGATTG 558
||| || |||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 479 TTTTGGACGTGTATAGCTTTGGGATTCTGATCAAAGGTTGTTGTGAAGCTGGTGAGATTG 538
Query 559 AGAAAAGTTTTGATCTTCTTGTTGAATTAAGAGAGTTTGGGTTTTCTCCAAACGTTGTTA 618
||||||| |||||||||||| ||||||| | ||||||||||||||||||||| || ||||
Sbjct 539 AGAAAAGCTTTGATCTTCTTATTGAATTGACAGAGTTTGGGTTTTCTCCAAATGTAGTTA 598
Query 619 TCTACACTACTTTGATTGATGGGTGTTGCAAGAGAGGAGAGATTGAGAAGGCGAAAGATT 678
||||||||||||||||||||||||||||||||| ||| |||||||||||||| |||||||
Sbjct 599 TCTACACTACTTTGATTGATGGGTGTTGCAAGAAAGGTGAGATTGAGAAGGCTAAAGATT 658
Query 679 TGTTTTTTGAGATGGGG-AAGTTCGGATTAGTGGCTAATGAATGGACTTACACGGTTTTG 737
||||||||||||||||| || || ||||||||||||||||| | |||||||||||||||
Sbjct 659 TGTTTTTTGAGATGGGGAAACTT-GGATTAGTGGCTAATGAGCGTACTTACACGGTTTTG 717
Query 738 ATTCATGGGTTATTCAAAAATGGGATTAAGAAACAAGGGTTTGAGATGTACGAGAAGATG 797
||| |||||||||||||||| ||| ||||||||||||||||||||||||| |||||||||
Sbjct 718 ATTAATGGGTTATTCAAAAACGGGGTTAAGAAACAAGGGTTTGAGATGTATGAGAAGATG 777
Query 798 CAGGAAGATGGTGTTTTCCCTAATCTCTATACTTATAACTGCGTGATGAATCAGCTTTGT 857
||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 778 CAGGAAGATGGAGTTTTCCCTAATCTCTATACTTATAACTGTGTGATGAATCAGCTTTGT 837
Query 858 AAAGATGGAAGAACTAAAGATGCGTTTAAACTGTTCGACGAAATGCGTGAGAGAGGAGTT 917
|||||||||||||| |||||||| || || ||||||||||||||||||||||||| |||
Sbjct 838 AAAGATGGAAGAACAAAAGATGCATTCCAAGTGTTCGACGAAATGCGTGAGAGAGGGGTT 897
Query 918 TCTTGTAACATTGTTACTTATAATACTTTGATTGGTGGGTTATGTAGAGAGATGAAGGCG 977
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
Sbjct 898 TCTTGTAACATTGTCACTTATAATACTTTGATTGGTGGGTTATGTAGAGAGATGAAGTTG 957
Query 978 AATGAAGCTAATAAGGTTATGGATCAAATGAAGAGTGATGGAATCAACCCGAATCTGATT 1037
||||| || ||||| ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 958 AATGAGGCAAATAAAGTTGTGGATCAAATGAAGAGTGATGGAATCAACCCGAATCTGATT 1017
Query 1038 ACGTATAACACTTTGATTGATGGGTTTTGTGGCGTGGGAAAATTGGGGAAGGCGTTGAGT 1097
|||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 1018 ACGTATAACACTTTGATTGATGGGTTTTGTGGTGTGGGAAAATTAGGGAAGGCGTTGAGT 1077
Query 1098 TTATGCAGAGATTTGAAGTCAAGAGGTCTGTCTCCGTCTCTTGTCACGTATAATATTCTA 1157
|||||||||||||||||||||||||||||||||||||| || |||||||||||||| |||
Sbjct 1078 TTATGCAGAGATTTGAAGTCAAGAGGTCTGTCTCCGTCCCTCGTCACGTATAATATCCTA 1137
Query 1158 GTTTCCGGGTTTTGTAAGAAAGGG-GATACTTCAGGAGCAGGTAAGGTGGTTAAGGAGAT 1216
||||||||||| |||| |||| || |||||||||||||||| |||| |||||||||||||
Sbjct 1138 GTTTCCGGGTTCTGTA-GAAAAGGAGATACTTCAGGAGCAGCTAAGATGGTTAAGGAGAT 1196
Query 1217 GGAAGAGAGAGGGATTAAACCGTCGAAAATAACATACACGATACTTATCGACACATTTGC 1276
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1197 GGAAGAGAGAGGGATTAAACCGTCGAAAGTAACATACACGATACTTATCGACACATTTGC 1256
Query 1277 TCGTAT-GGATAACATGGAGAAAGCAATTCAGCTTCGA-TCATCAATGGAGGAACTCGGT 1334
|||| | ||||||||||||||||||||||||||||||| | ||||||||||||||| ||
Sbjct 1257 TCGT-TCGGATAACATGGAGAAAGCAATTCAGCTTCGACT-ATCAATGGAGGAACTAGGA 1314
Query 1335 TTAACCCCGGATGTTCATACCTATAGTGTATTGATTCATGGGTTTTGCATCAAAGGTCAA 1394
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1315 TTAGTCCCGGATGTTCATACCTATAGTGTATTGATTCATGGGTTTTGCATCAAAGGTCAA 1374
Query 1395 ATGAATGAAGCATCGAGGCTTTTTAAGTTGATGGTCGCAAAGAAGT-TAGAACCGAACAA 1453
|||||||||||||| ||||||||||||| |||||||| |||||| | | ||||||||| |
Sbjct 1375 ATGAATGAAGCATCTAGGCTTTTTAAGTCGATGGTCGAAAAGAATTGT-GAACCGAACGA 1433
Query 1454 AGTGATATACAATACAATGGTTCTCGGGTACTGCAAGGAAGGTAGTTCTTATAGAGCATT 1513
|| ||||||||||| ||| |||| || || || ||||||||||||||||||||||||||
Sbjct 1434 GGTTATATACAATACGATGATTCTTGGTTATTGTAAGGAAGGTAGTTCTTATAGAGCATT 1493
Query 1514 GAGGTTG-TTCAGGGAGATGGAAGAGAAAGAGTTGCCTCCAAATGTTGCTAGCTATAGAT 1572
|| |||| || ||| |||||||||||||||||||| ||||||||||||||||||| ||||
Sbjct 1494 GAAGTTGCTTAAGG-AGATGGAAGAGAAAGAGTTGGCTCCAAATGTTGCTAGCTACAGAT 1552
Query 1573 ATATGATTGAAGTTCTTTGTAAAGAACGAAAATCGAAAGAAGCTGAGGGTTTGGTTGAGA 1632
|||||||||||||||||||||||||| |||||||||||||||||||| |||| |||||||
Sbjct 1553 ATATGATTGAAGTTCTTTGTAAAGAAAGAAAATCGAAAGAAGCTGAGCGTTTAGTTGAGA 1612
Query 1633 AGATGATTGATACAGGGATTGATCCATCTGA-TTCAATCCTTAATTTGATCTCTAGAGCC 1691
||||||||||| ||||||||||||||||| | ||||||||||| ||||||||||||||||
Sbjct 1613 AGATGATTGATTCAGGGATTGATCCATCT-ACTTCAATCCTTAGTTTGATCTCTAGAGCC 1671
Query 1692 AAAAATGATTCACATGTAAGCTCAAA-TAA 1720
||||| |||||||||||||||||||| |||
Sbjct 1672 AAAAACGATTCACATGTAAGCTCAAAATAA 1701
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 86395137945
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5