BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg925929

Length=448
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G11700.1 | Symbols:  | Protein of unknown function (DUF626) ...   320    7e-87


> AT4G11700.1 | Symbols:  | Protein of unknown function (DUF626) 
| chr4:7058086-7058637 REVERSE LENGTH=552
Length=552

 Score =  320 bits (173),  Expect = 7e-87
 Identities = 231/259 (89%), Gaps = 4/259 (2%)
 Strand=Plus/Plus

Query  89   TGGCCGATTTTACGTTCTGAACAAATCAGAGATCGAAGATAATGAATGGATTCTTCTCTA  148
            ||||||||||||||| ||| |||| ||| |||||||||| |||| |||||||||||||||
Sbjct  177  TGGCCGATTTTACGTGCTGGACAAGTCACAGATCGAAGACAATGCATGGATTCTTCTCTA  236

Query  149  TTTAGAACTTGCTGTTGCCACATCTTTCAGGAACCATACCAAACATGGTCTAATCAGTTT  208
            ||| || |||| ||| |||||||||||||||||||||| || ||||||||||| ||||||
Sbjct  237  TTTGGAGCTTGTTGTGGCCACATCTTTCAGGAACCATATCACACATGGTCTAACCAGTTT  296

Query  209  GAAGATTCTGAAAGTAGCTATGGAAATTCCACCAAG-CCTGGTGGAGC-CTTTTAATAAG  266
            ||||||||| ||||| |||||||||||| ||  ||| || || ||  | || |||||| |
Sbjct  297  GAAGATTCTTAAAGTGGCTATGGAAATTTCAAGAAGCCCCGG-GG-TCTCTGTTAATATG  354

Query  267  GGACTTGACGCCTATGATGCAATTTTCTACATTAGCTACAAGGACTTTTGCAAGGCTCGG  326
            |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct  355  GGACTTGACGCCTATGATGCAACTTTCTACATTAGCTACAAGGACTTTTGCAAGGCTCGG  414

Query  327  GTTGGTAAGGATGTCGATC  345
            ||||||||||| |||||||
Sbjct  415  GTTGGTAAGGAAGTCGATC  433



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 21313525576


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5