BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg925930

Length=260
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G66970.2 | Symbols: SVL2 | SHV3-like 2 | chr1:24992553-24996...   115    2e-25


> AT1G66970.2 | Symbols: SVL2 | SHV3-like 2 | chr1:24992553-24996117 
REVERSE LENGTH=2663
Length=2663

 Score =  115 bits (62),  Expect = 2e-25
 Identities = 69/72 (96%), Gaps = 2/72 (3%)
 Strand=Plus/Plus

Query  190   GTTATATCGAAAA-ATGGTGCGAGTGGGGACTATCCTGGATGTACAAACTTGGCATATGA  248
             |||||||| |||| |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct  1280  GTTATATC-AAAAGATGGTGCGAGTGGGGACTATCCTGGATGTACAGACTTGGCATATGA  1338

Query  249   GAAGGCAATCAA  260
             ||||||||||||
Sbjct  1339  GAAGGCAATCAA  1350



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 11863188764


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5