BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg925932
Length=646
Score E
Sequences producing significant alignments: (Bits) Value
AT1G79730.1 | Symbols: ELF7 | hydroxyproline-rich glycoprotein ... 187 1e-46
> AT1G79730.1 | Symbols: ELF7 | hydroxyproline-rich glycoprotein
family protein | chr1:30000538-30004005 REVERSE LENGTH=2011
Length=2011
Score = 187 bits (101), Expect = 1e-46
Identities = 117/125 (94%), Gaps = 0/125 (0%)
Strand=Plus/Plus
Query 350 TAGAGAGAGACAAATCATGGATATTGAAGCATCCTTTGAGGCATGCAAGTCTCAACCAAT 409
||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| |
Sbjct 1065 TAGAGAGAGACAAATCAAGGATATTGAAGCATCCTTTGAGGCATGCAAGTCTCGACCAGT 1124
Query 410 TCATTCCACCAATAAAAACGTGCAACCGGTTGAAGTTTTACCACTGTTGGCATATTTTGA 469
|||| |||||||||||||| |||| |||||||||||| ||||||||||| ||||||||||
Sbjct 1125 TCATGCCACCAATAAAAACTTGCAGCCGGTTGAAGTTCTACCACTGTTGCCATATTTTGA 1184
Query 470 TAGGT 474
|||||
Sbjct 1185 TAGGT 1189
Score = 124 bits (67), Expect = 8e-28
Identities = 80/86 (93%), Gaps = 1/86 (1%)
Strand=Plus/Plus
Query 186 CAAGGAAAGTCGCTAACTGAGAAACAAGGAAAGGAACTGCGAGAGATGAAAGGAGGCATC 245
||| || |||||||||| ||||| |||| |||||||||||||||||||||||||||||||
Sbjct 983 CAA-GACAGTCGCTAACGGAGAAGCAAGCAAAGGAACTGCGAGAGATGAAAGGAGGCATC 1041
Query 246 AACATCTTGGACAATCTTAACAATAG 271
||||||||| ||||||||||||||||
Sbjct 1042 AACATCTTGCACAATCTTAACAATAG 1067
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31195405287
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5