BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg925945
Length=718
Score E
Sequences producing significant alignments: (Bits) Value
AT1G67080.1 | Symbols: ABA4 | abscisic acid (aba)-deficient 4 |... 1011 0.0
> AT1G67080.1 | Symbols: ABA4 | abscisic acid (aba)-deficient 4
| chr1:25045225-25046860 REVERSE LENGTH=1022
Length=1022
Score = 1011 bits (547), Expect = 0.0
Identities = 659/711 (93%), Gaps = 15/711 (2%)
Strand=Plus/Plus
Query 9 AGATTTAAATCAGAGATGGCTTTTTCTTCTTTCATTTCTCAACCTTTGTCTTCATCTCTC 68
|||||| |||||||||||| ||||||||||||||||||||| ||||||||||||||||||
Sbjct 165 AGATTTGAATCAGAGATGGGTTTTTCTTCTTTCATTTCTCAGCCTTTGTCTTCATCTCTC 224
Query 69 ACGATGATGAAACGCAACATTTCGGCTAAAAGATCGGAACTTTGTCTTGACTCTTCAAAG 128
|| |||||||||||||| |||| |||||||||||||||||||||||||| |||||||||
Sbjct 225 TCGGTGATGAAACGCAACGTTTCTGCTAAAAGATCGGAACTTTGTCTTGATTCTTCAAAG 284
Query 129 ATTAGATTAGATCATCGTTGGAGCTTCATTGGAGGATCAGGAATCTCTGTTCAGTCCAAT 188
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 285 ATTAGATTAGATCATCGTTGGAGCTTCATTGGAGGATCAAGAATCTCTGTTCAGTCCAA- 343
Query 189 GTTTCGTTGAATTCTAACTCTGTAGTTCGCAAGAAATTCTCCGGTGTACGAGCTTCATGG 248
||| || | | || | ||||||| |||||||||||||||||||||||||||||||
Sbjct 344 --TTC-TT--A--C--AC-C-GTAGTTCACAAGAAATTCTCCGGTGTACGAGCTTCATGG 392
Query 249 TTAACTACTTCTCAGATTGCAAGCAGTGTATTTGCGGTTGGAACTACTGCGGTTCTT-CC 307
||||||||| ||||||||||||||||||||||||||||||||||||| |||||| || ||
Sbjct 393 TTAACTACTACTCAGATTGCAAGCAGTGTATTTGCGGTTGGAACTACCGCGGTT-TTACC 451
Query 308 CTTTTATACTCTCATGGTTGTAGCTCCAAAAGCTGAAATTACCAAGAAGTGTATGGAGAG 367
||| |||||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 452 CTTCTATACTCTAATGGTTGTAGCACCAAAAGCTGAAATTACCAAGAAGTGTATGGAGAG 511
Query 368 TAGCATACCGTATATCGTCTTAGGCGTATTATACGCGTATTTGTTATACCTTTCTTGGAC 427
|||| ||||||||||| |||||||||||||||| | ||||||||||||| ||||||||||
Sbjct 512 TAGCGTACCGTATATCATCTTAGGCGTATTATATGTGTATTTGTTATACATTTCTTGGAC 571
Query 428 ACCCGAGACGCTCAAATACATGTTTTCTAGTAAATACATGTTGCCAGAGCTGTCCGGAAT 487
||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||
Sbjct 572 ACCCGAGACGCTCAAATACATGTTTTCTAGTAAATACATGTTGCCAGAGTTGTCTGGAAT 631
Query 488 AGCAAAAATGTTCTCAAGTGAAATGACTCTTGCTTCTGCTTGGATTCATCTTCTTGTGGT 547
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 632 AGCTAAAATGTTCTCAAGTGAAATGACTCTTGCTTCTGCTTGGATTCATCTTCTTGTTGT 691
Query 548 AGATCTTTTTGCTGCACGGCAAGTTTATAATGATGGGTTAGAGAATCAGATCGAGACGAG 607
||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 692 AGATCTTTTCGCTGCACGGCAAGTTTATAATGATGGGTTAGAGAACCAGATCGAGACGAG 751
Query 608 GCATTCGGTTTCGCTCTGCCTTCTCTTCTGTCCGGTTGGAATCGTTTCGCATTTCGTAAC 667
|||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 752 GCATTCGGTTTCACTTTGCCTTCTCTTCTGTCCGGTTGGAATCGTTTCGCATTTCGTAAC 811
Query 668 CAAAGCTTTAATCAACACCCAGGGCAAGTAAAATTGGTGATCTTGGTCTCT 718
||||||| ||||||||| |||| ||| ||| | | |||||||||| |||
Sbjct 812 CAAAGCTATAATCAACAACCAGTACAAATAAGCT-GATGATCTTGGTTTCT 861
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34812263871
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5