BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg925952
Length=903
Score E
Sequences producing significant alignments: (Bits) Value
ATCG00270.1 | Symbols: PSBD | photosystem II reaction center pr... 1181 0.0
> ATCG00270.1 | Symbols: PSBD | photosystem II reaction center
protein D | chrC:32711-33772 FORWARD LENGTH=1062
Length=1062
Score = 1181 bits (639), Expect = 0.0
Identities = 649/654 (99%), Gaps = 0/654 (0%)
Strand=Plus/Plus
Query 250 TACTGTGGGGTCCTGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGTGGTCTAT 309
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 275 TACTGTGGGGTCCTGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGTGGTCTAT 334
Query 310 GGGCTTTTGTTGCTCTCCACGGCGCTTTCGCATTAATAGGTTTTATGTTACGTCAATTTG 369
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 335 GGGCTTTTGTTGCTCTCCACGGCGCTTTCGCATTAATAGGTTTTATGTTACGTCAATTTG 394
Query 370 AACTTGCTCGATCTGTTCAATTGCGACCATATAATGCAATCGCATTCTCTGGTCCCATTG 429
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 395 AACTTGCTCGATCTGTTCAATTGCGACCTTATAATGCAATCGCATTCTCTGGTCCCATTG 454
Query 430 CTGTTTTTGTTTCTGTCTTCCTAATTTATCCACTAGGTCAATCTGGTTGGTTCTTTGCGC 489
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 455 CTGTTTTTGTTTCTGTCTTCCTAATTTATCCACTAGGTCAATCTGGTTGGTTCTTTGCGC 514
Query 490 CTAGTTTTGGTGTAGCGGCTATATTTCGATTCATCCTCTTTTTCCAAGGGTTTCATAATT 549
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 515 CTAGTTTTGGTGTAGCGGCTATATTTCGATTCATCCTCTTTTTCCAAGGGTTTCATAATT 574
Query 550 GGACATTGAACCCATTTCATATGATGGGAGTCGCCGGTGTACTTGGCGCGGCTCTGCTAT 609
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 575 GGACATTGAACCCATTTCATATGATGGGAGTCGCCGGTGTACTGGGCGCGGCTCTGCTAT 634
Query 610 GCGCTATTCATGTTGCTACTGTAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATA 669
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 635 GCGCTATTCATGGTGCTACTGTAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATA 694
Query 670 CATTCCGTGCTTTTAACCCAACTCAAGCCGAAGAAACTTATTCAATGGTCACCGCTAACC 729
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 695 CATTCCGTGCTTTTAACCCAACTCAAGCCGAAGAAACTTATTCAATGGTCACCGCTAACC 754
Query 730 GCTTTTGGTCACAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTA 789
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 755 GCTTTTGGTCACAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTA 814
Query 790 TGTTATTTGTACCGGTAACTGGTTTATGGATGAGTGCTCTTGGAGTAGTCGGTCTAGCTT 849
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 815 TGTTATTTGTACCGGTAACTGGTTTATGGATGAGTGCTCTTGGAGTAGTCGGTTTAGCTT 874
Query 850 TGAACCTACGTGCCTATGACTTTGTTTCCCAGGAAATCCGTGCAGCGGAAGATC 903
|||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 875 TGAACCTACGTGCCTATGACTTCGTTTCCCAGGAAATCCGTGCAGCGGAAGATC 928
Score = 355 bits (192), Expect = 4e-97
Identities = 192/192 (100%), Gaps = 0/192 (0%)
Strand=Plus/Plus
Query 39 ATGACTATAGCCCTTGGTAAATTTACCAAAGACGAAAAAGATTTATTTGATATTATGGAT 98
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGACTATAGCCCTTGGTAAATTTACCAAAGACGAAAAAGATTTATTTGATATTATGGAT 60
Query 99 GACTGGTTACGGAGGGACCGCTTCGTTTTTGTAGGTTGGTCTGGTCTATTGCTCTTTCCT 158
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GACTGGTTACGGAGGGACCGCTTCGTTTTTGTAGGTTGGTCTGGTCTATTGCTCTTTCCT 120
Query 159 TGTGCCTATTTCGCTTTAGGGGGTTGGTTCACAGGTACAACCTTTGTAACTTCATGGTAT 218
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TGTGCCTATTTCGCTTTAGGGGGTTGGTTCACAGGTACAACCTTTGTAACTTCATGGTAT 180
Query 219 ACTCATGGATTG 230
||||||||||||
Sbjct 181 ACTCATGGATTG 192
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44105581066
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5