BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg925957
Length=356
Score E
Sequences producing significant alignments: (Bits) Value
AT4G12810.1 | Symbols: | F-box family protein | chr4:7522831-7... 294 3e-79
AT1G67160.1 | Symbols: | F-box family protein with a domain of... 285 2e-76
AT4G12820.1 | Symbols: | F-box family protein with a domain of... 213 9e-55
> AT4G12810.1 | Symbols: | F-box family protein | chr4:7522831-7523979
REVERSE LENGTH=1149
Length=1149
Score = 294 bits (159), Expect = 3e-79
Identities = 250/293 (85%), Gaps = 9/293 (3%)
Strand=Plus/Plus
Query 12 AAGAAGGAGATGAATGATTCCGAGGAAAAGACATGCTATG-ACAATCCAAAGCAGCCAAT 70
||||||||||||| ||||||||| ||||||||| | ||| | | || ||| || | ||
Sbjct 19 AAGAAGGAGATGAGCGATTCCGAGAAAAAGACATTCAATGAAGATTCGAAA-CATTCGAT 77
Query 71 ACTTGTCGTGGACCTAGTTAGATTGATCTTAAAACGCTTAAGCTTTGTTGATTTTCATCG 130
||||| ||||||||| || ||||||||||| ||||||| ||||||||||||||||||||
Sbjct 78 ACTTGCCGTGGACCTGGTAAGATTGATCTTGGAACGCTTGAGCTTTGTTGATTTTCATCG 137
Query 131 AGCGAGATGCGTTTCTTCAACATGGTATATTGCTTCGAAATCAGTAACCGGAGTAACAAA 190
|||||||||||||||||||| ||||||||||||||| ||| |||| | |||||||||||
Sbjct 138 AGCGAGATGCGTTTCTTCAATATGGTATATTGCTTCCAAAACAGTCATTGGAGTAACAAA 197
Query 191 TCCAACAACTCCATGGATCATCCTCTTTCCAAACAA-ACATGTGGAAA-ACAACAACAAT 248
|||||||||||||||| ||||||| |||||||| | | ||||||||| | || || ||
Sbjct 198 TCCAACAACTCCATGGCTCATCCTATTTCCAAA-AGGAGATGTGGAAATA-AA-AA-AA- 252
Query 249 GTTTCATGTAAGTTATTCGATCTTCACGAAAACAAAACCTACATAATCAGAGA 301
| |||||||||||| | ||||| ||| |||||||||||||||||| | |||||
Sbjct 253 GATTCATGTAAGTTGTACGATCCTCATGAAAACAAAACCTACATAGTAAGAGA 305
> AT1G67160.1 | Symbols: | F-box family protein with a domain
of unknown function (DUF295) | chr1:25124819-25127098 REVERSE
LENGTH=1353
Length=1353
Score = 285 bits (154), Expect = 2e-76
Identities = 238/277 (86%), Gaps = 11/277 (4%)
Strand=Plus/Plus
Query 27 GATTCCGA-GGAAAAGACATGCTATGACAATCCAAAGCAGCCAATACTTGTCGTGGACCT 85
|||||||| |||||| | ||| | ||| || | |||| ||| || | ||||||||||
Sbjct 7 GATTCCGACGGAAAAAATATGGAAGGACGATTCGAAGCGGCC--TA--TATCGTGGACCT 62
Query 86 AGTTAGATTGATCTTAAAACGCTTAAGCTTTGTTGATTTTCATCGAGCGAGATGCGTTTC 145
||||||||| ||||| | ||||| ||||| |||||||||||||||||||||||||||||
Sbjct 63 AGTTAGATTAATCTTGGAGCGCTTGAGCTTCGTTGATTTTCATCGAGCGAGATGCGTTTC 122
Query 146 TTCAACATGGTATATTGCTTCGAAATCAGTAACCGGAGTAACAAATCCAACAACTCCATG 205
||||||||||||| |||||||||||||||| | |||||||||||||||||||||||||||
Sbjct 123 TTCAACATGGTATGTTGCTTCGAAATCAGTCATCGGAGTAACAAATCCAACAACTCCATG 182
Query 206 GATCATCCTCTTTCCAAACAAACATGTGGAAAACAACAACAATGTTTCATGTAAGTTATT 265
|||||| || |||||||||||| |||| ||||||||| ||| |||||||||| ||
Sbjct 183 GATCATTCTTTTTCCAAACAAAAATGTCGAAAACAACG-----GTT-CATGTAAGTTGTT 236
Query 266 CGATCTTCACGAAAACAAAACCTACATAATCAGAGAT 302
|||| ||| |||||||||||||||||||||||||||
Sbjct 237 TGATCCTCATGAAAACAAAACCTACATAATCAGAGAT 273
> AT4G12820.1 | Symbols: | F-box family protein with a domain
of unknown function (DUF295) | chr4:7527048-7529356 REVERSE
LENGTH=1552
Length=1552
Score = 213 bits (115), Expect = 9e-55
Identities = 213/258 (83%), Gaps = 15/258 (6%)
Strand=Plus/Plus
Query 11 AAAGAAGGAGATGAATGATTCCGAGGAAAAGACATGCTATGACAATCCAAAGCAGCCAAT 70
|||||||||||||| |||||||||||||| | |||| | ||| || |||||||||| |
Sbjct 361 AAAGAAGGAGATGAGCGATTCCGAGGAAAAAAAATGCAACGACGATTCAAAGCAGCCTGT 420
Query 71 ACTTGTCGTGGACCTAG-TTAGATTGATCTTAAAACGCTTAAGCTTTGTTGATTTTCATC 129
||||||| |||| || | |||||| ||| || | |||||||||||||||||||||||||
Sbjct 421 ACTTGTCTTGGA-CTTGCTTAGATCGATATTGGAGCGCTTAAGCTTTGTTGATTTTCATC 479
Query 130 GAG-CGAGATGCGTTTCTTCA-ACATGGTATATT-GCTTCGAAATCA-GTAACCGGAGTA 185
||| | |||||| |||||| | | ||||||| | |||||| ||||| || | | ||||
Sbjct 480 GAGGC-AGATGCATTTCTTTAGA-ATGGTAT-TCAGCTTCGGAATCATGTCTC-GCAGTA 535
Query 186 ACAAATCCAACAACTCCATGGATCATCCTCTTTCCAAAC-AAACATGTGGAAAACAACAA 244
| ||||||||||| ||||||||||||||||||||||| | ||| ||||||||| ||| ||
Sbjct 536 AAAAATCCAACAAGTCCATGGATCATCCTCTTTCCAAGCGAAA-ATGTGGAAAGCAAAAA 594
Query 245 CAATGTTTCATGTAAGTT 262
| || | ||||||||||
Sbjct 595 CGAT-T--CATGTAAGTT 609
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 16688892668
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5