BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg925966
Length=470
Score E
Sequences producing significant alignments: (Bits) Value
AT1G67250.1 | Symbols: | Proteasome maturation factor UMP1 | c... 713 0.0
AT5G38650.1 | Symbols: | Proteasome maturation factor UMP1 | c... 368 2e-101
> AT1G67250.1 | Symbols: | Proteasome maturation factor UMP1 |
chr1:25163642-25165056 REVERSE LENGTH=681
Length=681
Score = 713 bits (386), Expect = 0.0
Identities = 434/457 (95%), Gaps = 4/457 (1%)
Strand=Plus/Plus
Query 10 GAAGTAGAACAATGGAGTCTCAGAAGAAGATAGCTCATGAGATCGGTGGTGTTAAGAATG 69
|||||| ||||||||||||| |||| |||||||||||||||||||||||||| || || |
Sbjct 80 GAAGTA-AACAATGGAGTCTGAGAAAAAGATAGCTCATGAGATCGGTGGTGTCAAAAACG 138
Query 70 ACGCTCTCCGATTTGGTCTCCACGGCGTTAAAAGCGACATCATCGGATCTCACCCACTTG 129
||||||| ||||||||||| ||||||||||| ||| |||||||||||||||||||||| |
Sbjct 139 ACGCTCTTCGATTTGGTCTTCACGGCGTTAAGAGCAACATCATCGGATCTCACCCACTCG 198
Query 130 AATCCTCTTACGAATCTGAAAAGAAATCGAAAGAGGAGTTGAAGAGGACGGTCATTGCGC 189
|||| || |||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 199 AATCGTCATACGAATCTGAAAAGAAATCGAAAGAGGCGTTGAAGAGGACGGTCATTGCGC 258
Query 190 ATGCCTACGGGACTGCACTTCCGTTGAAGATGGATATGGATAGGCAAATTCTCTCAAGGT 249
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 259 ATGCCTACGGGACTGCACTTCCGTTGAAGATGGATATGGATAGGCAAATTCTCTCAAGGT 318
Query 250 TTCAGAGACCTCCTGGACCAATTCCGTCGTCGATGCTTGGTTTAGAAGTCTACACAGGAG 309
||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 319 TTCAGAGACCTCCTGGACCAATTCCGTCGTCGATGCTCGGTTTAGAAGTCTACACGGGAG 378
Query 310 CTGTGGATGACTTTGGTTTTGAGGATTACTTGAATGATCCCCGTGATTCCGAGACATTCA 369
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 379 CTGTGGATGACTTTGGTTTTGAGGATTACTTGAATGATCCTCGTGATTCCGAGACATTCA 438
Query 370 AGCCGGTAGACTTCCACCACGGGATGGAAGTTCGTCTTGGCATCTCAAAGGGACCGGTTA 429
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 439 AGCCGGTAGACTTCCACCACGGGATGGAAGTTCGTCTTGGCATCTCAAAGGGACCGATTT 498
Query 430 ACCCAAGTTTCATGTAAGGCTCCCTCATGGGTGGTTT 466
||||||||||||||||| | || |||||||||||||
Sbjct 499 ACCCAAGTTTCATGTAA--C-CCTTCATGGGTGGTTT 532
> AT5G38650.1 | Symbols: | Proteasome maturation factor UMP1 |
chr5:15470961-15472815 REVERSE LENGTH=789
Length=789
Score = 368 bits (199), Expect = 2e-101
Identities = 369/450 (82%), Gaps = 16/450 (4%)
Strand=Plus/Plus
Query 4 GAAGAAGAAGTAGAACA-ATGGAGTCTCAGAAGAAGATAGCTCATGAGATCGGTGGTGTT 62
||||| |||| || | | |||||||| |||||||||||||||||||||||||| ||| |
Sbjct 100 GAAGAGGAAG-AGGAGAGATGGAGTCGCAGAAGAAGATAGCTCATGAGATCGGAGGTATG 158
Query 63 AAGAATGACGCTCTCCGATTTGGTCTCCACGGCGTTAAAAGCGACATCATCGGATCTCAC 122
||||| || ||||| || |||||||| ||||||||||| ||||| ||| | |||||||
Sbjct 159 AAGAACGATGCTCTTCGCTTTGGTCTTCACGGCGTTAAGAGCGATATCCTTAGATCTCAT 218
Query 123 CCACTTGAATCCTCTTACGAATCTGAAAAGAAATCGA-AAGAGGAGTTGAAGAGGACG-G 180
|| || ||| | |||||||||||| ||| |||| | |||| || ||||||||| | |
Sbjct 219 CCTCTCGAAACGGCTTACGAATCTGGGAAGCAATC-ACAAGAAGAAATGAAGAGGA-GAG 276
Query 181 TCATTGCGCATGCCTACGGGA-CTGCACTTCCGTTGAAGATGGATATGGATAGGCAAATT 239
| || ||||| | || ||| |||| ||||| |||||||||||| | ||||| |||||
Sbjct 277 TGATCACGCATACTTA-TGGAGCTGCTCTTCCTTTGAAGATGGATCTTGATAGACAAATC 335
Query 240 CTCTCAAGGTTTCAGAGACCTCCTGGACCAATTCCGTCGTCGATGCTTGG-TTTAGAAGT 298
|| || |||||||||||||||||||||||||||| || || |||||||| || |||||
Sbjct 336 CTTTCTCGGTTTCAGAGACCTCCTGGACCAATTCCTTCATCAATGCTTGGCCTT-GAAGT 394
Query 299 CTACACAGGAGCTGTGGATGACTTTGGTTTTGAGGATTACTTGAATGATCCCCGTGATTC 358
||||||||||||| | ||| | ||||||||||||||||||||||||||||| || || ||
Sbjct 395 CTACACAGGAGCTCTAGATAATTTTGGTTTTGAGGATTACTTGAATGATCCTCGCGAATC 454
Query 359 CGAGACATTCAAGCCGGTAGACTTCCACCACGGGATGGAAGTTCGTCTTGG-CATCTC-A 416
|||||| | || || |||||||| |||||||||||||||||||| ||||| | |||| |
Sbjct 455 CGAGACGCTGAAACCAGTAGACTTTCACCACGGGATGGAAGTTCGGCTTGGTC-TCTCCA 513
Query 417 AAGGGACCGG-TTAACCCAAGTTTCATGTA 445
|||| || | || |||||||||||||||
Sbjct 514 AAGGC-CCAGCTTC-CCCAAGTTTCATGTA 541
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 22354195415
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5