BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg925969
Length=1336
Score E
Sequences producing significant alignments: (Bits) Value
AT1G67270.1 | Symbols: | Zinc-finger domain of monoamine-oxida... 771 0.0
AT1G67780.1 | Symbols: | Zinc-finger domain of monoamine-oxida... 259 5e-68
> AT1G67270.1 | Symbols: | Zinc-finger domain of monoamine-oxidase
A repressor R1 protein | chr1:25183177-25185939 REVERSE
LENGTH=1772
Length=1772
Score = 771 bits (417), Expect = 0.0
Identities = 551/611 (90%), Gaps = 27/611 (4%)
Strand=Plus/Plus
Query 711 GGGTGTTACTGCGTATG-GAACATGAATGCATCAAGAAAGCTCAAGCTTCTAAATTTCTT 769
||||||| ||||||||| ||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1100 GGGTGTTGCTGCGTATGAGAAGATGAATGCATCAAGAAAGCTCAAGCTTCTAAATTTCTT 1159
Query 770 ATGTGATGAATCACTTAGCACATGGGCAATGAGGAATTACATTAAA-AGCCAAACTAG-A 827
||||||||||||||||||||||||||||||||||||||||| |||| ||||||||| | |
Sbjct 1160 ATGTGATGAATCACTTAGCACATGGGCAATGAGGAATTACA-TAAATAGCCAAACT-GAA 1217
Query 828 GAGTGTGGAGAACagaaaaaagaagctaaagaaaaagcttcagccgcaaaag-aaaagga 886
||||||||||||| |||||| ||||||||| |||| ||| ||||||| |||| |||||||
Sbjct 1218 GAGTGTGGAGAACGGAAAAAGGAAGCTAAACAAAAGGCTGCAGCCGC-AAAGCAAAAGGA 1276
Query 887 gaaggagctcaaac-----a---aa--T---GTTG-C-AA--GGTGA-GGAGAAAAACGG 928
|||| ||||||||| | || | |||| | || | | ||||||||||||
Sbjct 1277 GAAGCAGCTCAAACAGAAGATGCAAGGTGAGGTTGCCAAATCCATTATGGAGAAAAACGG 1336
Query 929 AGCTCCATTGTTTATTGAGGAACACAAGTCAGTTGTGTCTCAAATAAGAGATGAAGCTAA 988
||||||||||| ||||||||||||||| ||| | ||||||||||||||||||||||||||
Sbjct 1337 AGCTCCATTGTCTATTGAGGAACACAACTCAATCGTGTCTCAAATAAGAGATGAAGCTAA 1396
Query 989 AAAAGCTCATGAAGAAATGATAGAGGCAAAGGGCATGAAATCTGGAATGACGCTTATATG 1048
| ||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||
Sbjct 1397 AGAAGCTCATGAAGAAATGATGGAGGCAAAGGGCATGAAATCTAAAATGACGCTTATATG 1456
Query 1049 TGATGCGCGTAGAACGGAACCAATCATGTTGGATGATAATGGTTTTGTTCTCTGGAAATT 1108
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1457 TGATGCGCGTAGAACGGAACCAATCATGTTGGATGATAATGGTTTTGTTCTCTGGAAATT 1516
Query 1109 GAAGTGTTTTGAAGAAGAACAAAtttttttGCTTCAAGATCTAGGAACATTTGATGATTT 1168
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1517 GAAGTGTTTTGAAGAAGAACAATTTTTTTTGCTTCAAGATCTAGGAACATTTGATGATTT 1576
Query 1169 ATGTCCACATGAAAAATGGCTAACTTTTAAGCCTGAGCAGAAACCAGAGATAGAGAAATA 1228
|||||||||||||| |||| || ||||||| |||||||||||||||||||||||||| ||
Sbjct 1577 ATGTCCACATGAAAGATGGTTAGCTTTTAAACCTGAGCAGAAACCAGAGATAGAGAA-TA 1635
Query 1229 TATCTCTTCCAAGAGG-AGGAAACTGATGCGAACAcaaaagaaagcaaatgcaaaaaaga 1287
|||||||| |||||| | ||||||||||| || ||||||||| | |||| | |||||||
Sbjct 1636 TATCTCTTGTAAGAGGTAAGAAACTGATGCAAATACAAAAGAATGAAAATCCGAAAAAGA 1695
Query 1288 atgcaaatgcg 1298
|||||||||||
Sbjct 1696 ATGCAAATGCG 1706
Score = 340 bits (184), Expect = 2e-92
Identities = 208/220 (95%), Gaps = 0/220 (0%)
Strand=Plus/Plus
Query 490 GGAAAAAAGCCAAATCCAGTGACAAACTGAAAGAGGAGATTCAGTTTGAGGCTCAACTTC 549
|||| | ||||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 688 GGAAGAGAGCCAAACCCAGTGACAAACTGAAAGAGGAGATTCAGCTTGAGGCTCAACTTC 747
Query 550 CTCAGGGTATAAGCTTGACTTGTGTTTCAGGCATTGATATACCAGCTGAAGAAGCTGGAA 609
|| |||||||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 748 CTGAGGGTATAAGCTTGACTTGTGTTTCACGCATTGATATACCAACTGAAGAAGCTGGAA 807
Query 610 ATGTATGTCAGCTTTTCGAGTTTTGCTCTGCTTTTGGAAAGGTTCTTGCTTTGAAGGAAG 669
|||||||||||||||||||||||||||| || |||||||||| ||||||||||||||||
Sbjct 808 ATGTATGTCAGCTTTTCGAGTTTTGCTCAGCCTTTGGAAAGGCACTTGCTTTGAAGGAAG 867
Query 670 AACATGCTGAAACTATTGTCCGTGAGCTGTTTATATGTGG 709
|||||||||||||||||||||||||||||||||||||||
Sbjct 868 GACATGCTGAAACTATTGTCCGTGAGCTGTTTATATGTGG 907
Score = 265 bits (143), Expect = 1e-69
Identities = 182/201 (91%), Gaps = 2/201 (1%)
Strand=Plus/Plus
Query 6 TAATTTACTGTTGTTATGGCGAAAAAGCGTGAAACCAATCCTGGTGTTAGAATCATCGGA 65
||||||||||||||||||| || |||||||||||||||||| ||||||||| | |||||
Sbjct 132 TAATTTACTGTTGTTATGGTGAGAAAGCGTGAAACCAATCCCGGTGTTAGAGTTGTCGGA 191
Query 66 CGAAGAATATATGACTCCAAAAATGGCAAATCATGTCACCAGTGTCGACAAAAGACTCTT 125
|||||| ||||||||| ||||||||||||||||||||||||||||||| |||||||||
Sbjct 192 AAAAGAATTTATGACTCCCAAAATGGCAAATCATGTCACCAGTGTCGACAGAAGACTCTT 251
Query 126 GACTTTGCTGCACCATGCAAGGTCA-TGAAGAGGAACAAGCTATGTCCCATTAAGTTTTG 184
|||||||||||||| ||||||| || ||| |||||| |||||||||||||| ||||||||
Sbjct 252 GACTTTGCTGCACCGTGCAAGG-CAATGAGGAGGAAGAAGCTATGTCCCATAAAGTTTTG 310
Query 185 TTATAAATGCTTATCAAACAG 205
||| ||||||||||||| |||
Sbjct 311 TTACAAATGCTTATCAATCAG 331
Score = 135 bits (73), Expect = 8e-31
Identities = 83/88 (94%), Gaps = 0/88 (0%)
Strand=Plus/Plus
Query 291 AGGTATGGTGAAAATGCAGAAGAAGTAGCAAAGTTGGATGATTGGATATGTCCACTGTGT 350
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 330 AGGTATGGTGAAAATGCAGAAGAAGTAGCAAAGTTGGATGATTGGATATGTCCTCTGTGC 389
Query 351 AGAGGCATCTGTATCTGCAGTGTGTGCA 378
||||||||||| ||||| ||||| ||||
Sbjct 390 AGAGGCATCTGCATCTGTAGTGTATGCA 417
Score = 91.6 bits (49), Expect = 2e-17
Identities = 68/77 (88%), Gaps = 2/77 (3%)
Strand=Plus/Plus
Query 416 GGATTA-TCTTCAGTCTATGAACTTCTTGAAGTTGAAGGGCATGATAAGTTTGCTTATCA 474
||| || || |||||||||| |||||||||| ||| |||||||||||||||||||||||
Sbjct 474 GGA-TATTCCTCAGTCTATGCGCTTCTTGAAGCTGAGGGGCATGATAAGTTTGCTTATCA 532
Query 475 GAAGAAGCCAAAACTGG 491
|||||| ||| ||||||
Sbjct 533 GAAGAAACCAGAACTGG 549
> AT1G67780.1 | Symbols: | Zinc-finger domain of monoamine-oxidase
A repressor R1 protein | chr1:25412816-25415530 FORWARD
LENGTH=1539
Length=1539
Score = 259 bits (140), Expect = 5e-68
Identities = 184/205 (90%), Gaps = 4/205 (2%)
Strand=Plus/Plus
Query 495 AAAGCCAAAT-CCAGTGACAAACTGAAAGAGGAGATTCAGTTTGAGGCTCAACTTCCTCA 553
|||||| ||| ||| | |||| ||||||||||||||||||||||||||||||||||||||
Sbjct 538 AAAGCC-AATGCCACTCACAAGCTGAAAGAGGAGATTCAGTTTGAGGCTCAACTTCCTCA 596
Query 554 GGGTATAAGCTTGACTTGTGTTTCAGGCATTGATATACCAGCTGAAGAAGCTGGAAATGT 613
|||||||||||||| || ||| |||||| ||| ||||||| |||||||||||||||||||
Sbjct 597 GGGTATAAGCTTGATTTCTGTGTCAGGCGTTGTTATACCAACTGAAGAAGCTGGAAATGT 656
Query 614 ATGTC-AGCTTTTCGAGTTTTGCTCTGCTTTTGGAAAGGTTCTTGCTTTGAAGGAAGAAC 672
|| || ||||||||||||||||||| || |||||||||| ||||| |||||||||| ||
Sbjct 657 AT-TCCAGCTTTTCGAGTTTTGCTCAGCCTTTGGAAAGGCTCTTGAGTTGAAGGAAGGAC 715
Query 673 ATGCTGAAACTATTGTCCGTGAGCT 697
| ||||||||| |||||||||||||
Sbjct 716 AAGCTGAAACTGTTGTCCGTGAGCT 740
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65762713950
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5