BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg925985
Length=1834
Score E
Sequences producing significant alignments: (Bits) Value
AT1G67370.1 | Symbols: ASY1, ATASY1 | DNA-binding HORMA family ... 2926 0.0
AT4G32200.1 | Symbols: ASY2 | DNA-binding HORMA family protein ... 375 6e-103
> AT1G67370.1 | Symbols: ASY1, ATASY1 | DNA-binding HORMA family
protein | chr1:25239117-25243837 REVERSE LENGTH=2145
Length=2145
Score = 2926 bits (1584), Expect = 0.0
Identities = 1740/1816 (96%), Gaps = 8/1816 (0%)
Strand=Plus/Plus
Query 20 GGTGATGGCTCAGAAGCTGAAGGAAGCAGAGATTACTGAGCAGGACTCGCTTCTTCTGAC 79
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 127 GGTGATGGCTCAGAAGCTGAAGGAAGCAGAGATCACTGAGCAGGACTCGCTTCTTCTGAC 186
Query 80 TAGGAATTTGCTTCGTATTGCTATATTCAACATCAGCTATATCAGAGGACTCTTTCCTGA 139
||| |||||||||||||||||||| |||||||| || || ||||||||||||||||||||
Sbjct 187 TAGAAATTTGCTTCGTATTGCTATCTTCAACATAAGTTACATCAGAGGACTCTTTCCTGA 246
Query 140 GAAGTATTTCAACGATAAATCGGTTCCTGCTTTAGATATGAAGATTAAGAAGCTAATGCC 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 247 GAAGTATTTCAACGATAAATCGGTTCCTGCTTTAGATATGAAGATTAAGAAGCTAATGCC 306
Query 200 TATGGACGCTGAATCTCGCCGATTAATTGATTGGATGGAGAAAGGAGTCTACGATGCGCT 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 307 TATGGACGCTGAATCTCGCCGATTAATTGATTGGATGGAGAAAGGAGTCTACGATGCGCT 366
Query 260 TCAGAGGAAATATTTAAAGACGCTCATGTTCTGCATATGTGAAACAGTAGATGGTCCGAT 319
||||||||||||||| ||||||||||||||| ||||||||||||| || |||||||||||
Sbjct 367 TCAGAGGAAATATTTGAAGACGCTCATGTTCAGCATATGTGAAACTGTTGATGGTCCGAT 426
Query 320 GATTGAGGAATACGCATTTTCTTTCAGCTATTCAGATTCTGACAGCCAAGATGTCATGAT 379
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 427 GATTGAGGAATACTCATTTTCTTTCAGCTATTCAGATTCTGACAGCCAAGATGTCATGAT 486
Query 380 GAATATCAATCGTACTGGAAATAAGAAAAATGGAGGAACATTTAACTCCACTGCTGACAT 439
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 487 GAATATCAATCGTACTGGAAATAAGAAAAATGGAGGAATATTTAACTCCACTGCTGACAT 546
Query 440 TACTCCAAATCAAATGAGGAGTTCAGCTTGCAAAATGGTTCGTACACTAGTTCAACTGAT 499
||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 547 TACCCCAAATCAAATGAGGAGTTCAGCTTGCAAAATGGTTCGTACACTAGTTCAGCTGAT 606
Query 500 GAGGACTCTTGACAAAATGCCAGATGAGCGCACCATAGTGATGAAGCTTTTGTACTACGA 559
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 607 GAGGACTCTTGACAAAATGCCAGATGAGCGCACCATAGTGATGAAGCTTCTGTACTACGA 666
Query 560 TGATGTGACGCCACCAGATTATGAGCCACCTTTCTTCAGAGGCTGTACAGAAGACGAAGC 619
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 667 TGATGTGACGCCACCAGATTACGAGCCACCTTTCTTCAGAGGCTGTACAGAAGACGAAGC 726
Query 620 TCAGTATGTATGGACAAAGAATCCTCTGAGGATGGAAATTGGGAATGTTAACAGCAAACA 679
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 727 TCAGTATGTATGGACAAAGAATCCTCTGAGAATGGAAATTGGGAATGTTAACAGCAAACA 786
Query 680 TCTCGTGTTAACGCTAAAGGTCAAGAGCGTGCTTGATCCTTGTGAGGATGAAAATGACGA 739
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 787 TCTCGTGTTAACGCTAAAGGTCAAGAGCGTGCTTGATCCTTGTGAAGATGAAAATGACGA 846
Query 740 CATGCAAGATGATGGGAAGAGTATTGGACCTGATTCTGTACATGATGACCAGCCTTCTGA 799
||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 847 CATGCAAGATGATGGTAAGAGTATAGGACCTGATTCTGTACATGATGACCAGCCTTCTGA 906
Query 800 TTCAGATAGCGAGATCAGTCAAACACAAGAAAATCAATTCATTGTGGCGCCAGTAGAGAA 859
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 907 TTCAGATAGCGAGATCAGTCAAACACAAGAAAATCAATTCATTGTGGCGCCAGTAGAGAA 966
Query 860 ACAAGATGACGATGATGGAGAGGTTGATGAAGATGACAACACACAGGATCCGGTTGAGAA 919
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 967 ACAAGATGACGATGATGGAGAGGTTGATGAAGATGACAACACACAGGATCCGGCTGAGAA 1026
Query 920 TGAACAGCAGTTAGCAAGGGTAAAGGACTGGATCAACTCCCATCACCTCGATACCCTGGA 979
||||||||||||||||||||| ||||||||||||||||||| |||||| ||||| |||||
Sbjct 1027 TGAACAGCAGTTAGCAAGGGTGAAGGACTGGATCAACTCCCGTCACCTTGATACTCTGGA 1086
Query 980 GCTCACAGATATTCTTGCAAACTTCCCAGATATCTCAATAGTTCTATCTGAAGAAATCAT 1039
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1087 GCTCACAGATATTCTTGCAAACTTCCCAGATATCTCAATAGTTCTATCTGAAGAAATCAT 1146
Query 1040 GGATCAGCTCGTGACAGAAGGTGTTCTTTCGAAAACGGGCAAGGACACGTACATTAAAAA 1099
||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||
Sbjct 1147 GGATCAGCTCGTGACAGAAGGTGTTCTTTCGAAAACGGGGAAGGACATGTACATTAAAAA 1206
Query 1100 GAGAGACAAGACACCAGAGAGCGAGTTCACTTTTGTGAAAGATGAAGCTGATGTTCAAAC 1159
|||||||||||||||||||||||| ||||| ||||||||||| ||||| |||| |||||
Sbjct 1207 GAGAGACAAGACACCAGAGAGCGAATTCACCTTTGTGAAAGAGGAAGCCGATGGTCAAAT 1266
Query 1160 TGT-TCCAAAGGATGGGAAACCTGTAGCTCCTGAAGACTACTTGTACATGAAAGCTCTAT 1218
| | |||| || | ||| |||| |||||||||||||||||||||||||||||||| |
Sbjct 1267 T-TCTCCA--GG--G--AAATCTGTTGCTCCTGAAGACTACTTGTACATGAAAGCTCTTT 1319
Query 1219 ACCATTCTCTTCCGATGAAATATGTGACGATTACAAAGCTTCACAACATGCTGGATGGTG 1278
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1320 ACCATTCTCTTCCGATGAAATATGTGACAATTACAAAGCTTCACAACATGCTGGATGGTG 1379
Query 1279 AGGCCAATCAGACTGCAGTTCGTAAATTAATGGACAGGATGACCCAAGAGGGCTACGTGG 1338
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1380 AAGCCAATCAGACTGCAGTTCGTAAATTAATGGACAGGATGACCCAAGAGGGCTACGTGG 1439
Query 1339 AAGCTTCGAGCAACCGCAGGCTAGGAAAGCGTGTGATTCATTCTAGTCTAACTGAGAGGA 1398
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||
Sbjct 1440 AAGCTTCGAGCAACCGCAGGCTAGGGAAGCGTGTGATTCATTCTAGTCTAACTGAGAAGA 1499
Query 1399 AGCTAAATGAAGTCAGAAAGGTTCTTGCCACAGATGATATGGATGTGGATGTTAACGAAG 1458
||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||
Sbjct 1500 AGCTAAATGAAGTCAGAAAGGTTCTTGCCACCGATGATATGGATGTGGATGTTACCGAAA 1559
Query 1459 CTGCTAACAAGACCAACGGCCTAGAGGGCAAAGTAACCGCAGACGTATCTACCTGTGGAG 1518
|| ||||||||| ||||||| ||| | ||||||||||||||| ||||||||||||||||
Sbjct 1560 CTATTAACAAGACAAACGGCCCAGATGCCAAAGTAACCGCAGATGTATCTACCTGTGGAG 1619
Query 1519 GCATCCACTCCATAGGATCAGACTTCACACGTACGAAAGGAAGATCTGGTGGGATGCAGC 1578
| |||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1620 GTATCCACTCCATAGGTTCAGACTTCACACGCACGAAAGGAAGATCTGGTGGGATGCAGC 1679
Query 1579 AGAACGGCTCTGTTCTAAGTGAACAGACCATCTCTAAAGCTGGGAACACTCCCATTAGCA 1638
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1680 AGAACGGCTCTGTTCTAAGTGAACAGACTATCTCTAAAGCTGGGAACACTCCCATTAGCA 1739
Query 1639 ACAAGGCACAGCCTGCGGCTTCGAGGGAGAGCTTTGCGGTAAATGGAGGGGCTGCTAAGG 1698
||||||||||||||||||||||||||||||||||||||||| |||| || |||| |||||
Sbjct 1740 ACAAGGCACAGCCTGCGGCTTCGAGGGAGAGCTTTGCGGTACATGGTGGAGCTGTTAAGG 1799
Query 1699 AGGTCGAGACGGTCAATTGTAGCCAAGCCTCACAGGACAGACGTTGCAGGAAAACCAGCA 1758
| | |||||| ||||| ||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1800 AAGCCGAGACAGTCAACTGTAGCCAAGCCTCACAGGACAGACGTGGCAGGAAAACCAGCA 1859
Query 1759 TGGTGAGAGAGCCAATTCTGCAGTACTCTAAGCGTCAGAAATCTCAGGCTAATTGAAGAT 1818
||||||| ||||| |||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 1860 TGGTGAGGGAGCCTATTCTGCAGTACTCCAAGCGTCAGAAATCTCAAGCTAATTGAAGAC 1919
Query 1819 ACCACCTCTATCAGAC 1834
||||||||||||||||
Sbjct 1920 ACCACCTCTATCAGAC 1935
> AT4G32200.1 | Symbols: ASY2 | DNA-binding HORMA family protein
| chr4:15548840-15555094 FORWARD LENGTH=4332
Length=4332
Score = 375 bits (203), Expect = 6e-103
Identities = 333/395 (84%), Gaps = 12/395 (3%)
Strand=Plus/Plus
Query 57 GAGCAGGACTCGCTTC-TTCTGACTA-GGAATTTGCTTCGTATTGCTATATTCAACATCA 114
|||||| | |||| || || |||||| |||| ||||| |||| ||| || ||||| ||||
Sbjct 25 GAGCAGCAATCGC-TCATTTTGACTACGGAA-TTGCTCCGTACTGCCATCTTCAATATCA 82
Query 115 GCTATATCAGAGGACTCTTTCCTGAGAAGTATTTCAACGATAAATCGGTTCCTGCTTTAG 174
| || |||||||| |||||||| | | ||||||||| |||| ||||||||||||||||
Sbjct 83 GTTACATCAGAGGCCTCTTTCCCGTGCGGTATTTCAAGGATATGTCGGTTCCTGCTTTAG 142
Query 175 ATATGAAGATTAAGAAGCTAATGCCTATGGACGCTGAATCTCGCCGATTAATTGATTGGA 234
|| ||||||| ||||||||||||||||||||||||||||| |||||||| |||| ||||
Sbjct 143 ATCTGAAGATGAAGAAGCTAATGCCTATGGACGCTGAATCACGCCGATTGATTGGCTGGA 202
Query 235 TGGAGAAAGGAGTCTACGATGCGCTTCAGAGGAAATA-TTTAAAGACGCTCATGTTCTGC 293
|||||||||| ||||||||||| || || | |||| | | ||| | ||| || |||| |
Sbjct 203 TGGAGAAAGGGGTCTACGATGCCCTGCATAAGAAACACCTGAAA-AAGCTGATATTCTAC 261
Query 294 ATATGTGAAACAGTAGATGGTCCGATGATTGAGGAATACGCATTTTCTTTCAGCTATTCA 353
||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct 262 ATATGTGAAACAGTAGATGGTCCCTTGATTGAGGAATACATATTTTCTTTCAGCTATTCA 321
Query 354 GATTCTGACAGCCAAGATGTCATGATGAATATCAATCGTACTGGAAAT-AAGAAAAATGG 412
||||||||||| ||||||||| ||||||||||||| |||||||| | || | ||||
Sbjct 322 GATTCTGACAGTCAAGATGTCCGGATGAATATCAATATTACTGGAA-TCAATACCTATGG 380
Query 413 AGGAACAT-TTAACTCCACTGCTGACATTACTCCA 446
||||| | |||||||||||||||||| ||||||
Sbjct 381 GGGAAC-TCTTAACTCCACTGCTGACA--ACTCCA 412
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 90762585360
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5