BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg925990
Length=382
Score E
Sequences producing significant alignments: (Bits) Value
AT3G05170.1 | Symbols: | Phosphoglycerate mutase family protei... 316 7e-86
> AT3G05170.1 | Symbols: | Phosphoglycerate mutase family protein
| chr3:1466573-1468400 FORWARD LENGTH=1297
Length=1297
Score = 316 bits (171), Expect = 7e-86
Identities = 202/217 (93%), Gaps = 2/217 (1%)
Strand=Plus/Plus
Query 15 ACAACGATGCCGGATCATAAGATCGAGTTAACTGATTCCGGTTTGCTTCAGGCGCAGGAA 74
||||||| |||||||||||||||| ||||||| |||||||||||||||||||||||||||
Sbjct 253 ACAACGACGCCGGATCATAAGATCCAGTTAACGGATTCCGGTTTGCTTCAGGCGCAGGAA 312
Query 75 GCCAGAGCTCGTCTCCACACTTTGAT-TGGATCAAATCCTTCTTCACCGGAGTGGCGTGT 133
||| |||||||||||||| ||||||| | || ||||||||||||||||||||||||||
Sbjct 313 GCCGGAGCTCGTCTCCACGCTTTGATCT-CTTCTAATCCTTCTTCACCGGAGTGGCGTGT 371
Query 134 GTACTTCTACGTTTCGCCGTATGATCGGACTCGATCTACTCTCCGGGAGATCGGACGGTC 193
||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 372 GTACTTCTACGTTTCGCCGTACGATCGGACTCGATCTACGCTCCGGGAGATCGGACGGTC 431
Query 194 GTTCTCGAATCGCCGTGTGATTGGTATTCGCGAAGAA 230
||||||| |||||||||||||||| |||||||||||
Sbjct 432 GTTCTCGCGTCGCCGTGTGATTGGTGTTCGCGAAGAA 468
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 17995854142
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5