BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg925994
Length=1333
Score E
Sequences producing significant alignments: (Bits) Value
AT1G67440.1 | Symbols: emb1688 | Minichromosome maintenance (MC... 2076 0.0
AT1G67460.1 | Symbols: | Minichromosome maintenance (MCM2/3/5)... 728 0.0
> AT1G67440.1 | Symbols: emb1688 | Minichromosome maintenance (MCM2/3/5)
family protein | chr1:25263804-25265719 REVERSE LENGTH=1571
Length=1571
Score = 2076 bits (1124), Expect = 0.0
Identities = 1267/1337 (95%), Gaps = 5/1337 (0%)
Strand=Plus/Plus
Query 1 AACCCCAACCTAGTAAGAATATGCTCAGAGCGAAGCATATCGGTAAAAATTACTCTTCCT 60
|||||||||| || || |||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 149 AACCCCAACCGAGCAAAAATATGCTCAGAGCGAAGCACATCGGTAAAAATTACTCCTCCT 208
Query 61 CCTTGTCACCGGTTCTCTCGCCGGAGCATAAACCTTCGCTCTTAGAGTCTCAAGCTATCG 120
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 209 CCTTGTCACCAGTTCTCTCGCCGGAGCATAAACCTTCGCTCTTAGAGTCTCAAGCTATTG 268
Query 121 GTACTGTTGCCACAGCTCAAGCGAACTTTATGCGCGTCATTGTTCAAGATGTAGCTAGTT 180
||||||| || |||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 269 GTACTGTCGCAACAGCTCAAGCGAACTTTATGCGCGTCATTGTTCAAGATGTAGCTAATT 328
Query 181 CTGTGAAGAGTG--G-TGATGATGATTCGTCTAAGACTGGTGTTGAGTTGCTTTGTGTAG 237
|||||| ||||| | |||| ||||||| || |||||||||||||| ||||||||||| |
Sbjct 329 CTGTGACGAGTGATGATGATAATGATTCTTCAAAGACTGGTGTTGAATTGCTTTGTGTGG 388
Query 238 TGAGAGCTGTGTTGAAGAAGATACGAAGGAGAGTTTTGGTTGGAGATAAGGTTCTTGTTG 297
||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 389 TGAGAGCTGTGTTGAAGAAAATACGAAGGAGAGTTTTAGTTGGAGATAAGGTTCTTGTTG 448
Query 298 GATCTATTGATTGGGTTGATAGAAGAGGAATGATTGAGAATGTGTTTCATCGCCGCTCGG 357
|||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 449 GATCTATTGATTGGGTTGATAGAAGAGGAATGATTGAGAATGTGTTTCATCGACGTTCGG 508
Query 358 AGATTTTGGATCCACCGGTTGCGAACGTTGATCATTTGCTGGTTCTTTTCTCTTTGGATC 417
|||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 509 AGATTTTGGATCCACCTGTTGCGAACGTTGATCATTTGCTTGTTCTTTTCTCTTTGGATC 568
Query 418 AACCGAAACTGGAGCTGTTCACTCTCACTAGGTTCTTGGTGGAAGCTGAATCTACTCGAA 477
|||||||||| |||| ||| ||||| |||||||||||||||||||||||||||||||| |
Sbjct 569 AACCGAAACTTGAGCCGTTTACTCTTACTAGGTTCTTGGTGGAAGCTGAATCTACTCGTA 628
Query 478 TTCCATTAACACTTGCTTTGAATAAAACTGAACTCATTAGCGAAGAGGAATTGGAATCTT 537
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||
Sbjct 629 TTCCATTAACACTTGCTTTGAATAAAACTGAACTCATTAGTGAAGAGGAATTGGAAACTT 688
Query 538 GGAAGATAAGATTGCGTGGATGGAACTATGAACCATTGTTTTGTAGTGTGGGAACTAAAG 597
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 689 GGAAGATAAGGTTGCGTGGATGGAACTATGAACCATTGTTTTGTAGTGTGGGAACTAAAG 748
Query 598 ACGGACTTGATGCCATTGCGTTTGTTCTGCG-GAATCAGACTTCTGTGATTGTTGGACCT 656
| |||||||||| ||||||||||||||| | || |||||||||||||||||||||||||
Sbjct 749 ATGGACTTGATGATATTGCGTTTGTTCTGAGAGA-TCAGACTTCTGTGATTGTTGGACCT 807
Query 657 AGTGGTGTAGGAAAGTCGAGCTTAATCAACATTTTGAGGAGTAACCATGGTGGTGGTGTG 716
|||||||| ||||||||||| ||||||||| | ||||||||||| |||||||||||||||
Sbjct 808 AGTGGTGTTGGAAAGTCGAGTTTAATCAACGTATTGAGGAGTAATCATGGTGGTGGTGTG 867
Query 717 GTGGAAGATGAGAATTGGTTTGAGCCTATGTTAGGTAATAAGTGGTTTGATGATCAGCGA 776
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 868 GTGGAAGATGAGAATTGGTTTGAGCCTATGTTAGGTAATAAGTGGTTTGATGATCAGCGA 927
Query 777 GTAGGGGAAGTGTCTAGTAGAAGTGGTCGAGGTAAACATACAACACGAAATGTATCGCTA 836
||||||||||| || |||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 928 GTAGGGGAAGTTTCGAGTAGAAGTGGTAGAGGTAAACATACAACACGAAATGTATCGCTA 987
Query 837 CTGCCGATTTCTGAAGGTGGTTACCTCGCTGATACACCTGGCTTTAACCAGCCTAGTTTG 896
|||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 988 CTGCCGGTTTCTGAAGGTGGTTACCTCGCTGATACTCCTGGCTTTAACCAGCCTAGTTTG 1047
Query 897 CTGAAAGTAACAAAGCAATCACTTGCACACTGCTTTCCTGAGATACGGAACATGATTGAG 956
||||||||||| ||||| ||||| || ||||| |||||||||||||||||||||||||||
Sbjct 1048 CTGAAAGTAACGAAGCATTCACTAGCTCACTGTTTTCCTGAGATACGGAACATGATTGAG 1107
Query 957 GGCGAAAAATGTGGATTCAGAGATTGCTTGCATATTGGGGAACCAGGATGTGTTGTGAAA 1016
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1108 AGCGAAAAATGTGGATTCAGAGACTGCTTGCATATTGGGGAACCAGGATGTGTTGTGAAA 1167
Query 1017 GGTGATTGGGAAAGGTATCCTTACTACTTACAATTGCTTGATGAGATCAGAATCAGGGAA 1076
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1168 GGTGACTGGGAAAGGTATCCTTACTACTTACAATTGCTTGATGAGATCAGAATCAGGGAA 1227
Query 1077 GAGTTTCAGCTTAGGACTTTTGGAACCAAAAAGGAAGATGATGTTAGGTACAAGGTGGGA 1136
|| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1228 GAATTTCAGCTTAGGACTTTTGGAACCAAAAGGGAAGATGATGTTAGGTACAAGGTGGGA 1287
Query 1137 GACATGGGTGTGAAACATGCTGAACCGCGGCTAATGCCTAAGAAGCATAGGAGAGAGTCA 1196
|||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||
Sbjct 1288 GACATGGGTGTGAAACATGCTGAACCACGGTTAATGCCTAAGAAGCATAGGAGAGAGTCA 1347
Query 1197 AGGAAGAAAACTAAACAGACAATGATCAGTGAGCTTGATGAGTTCGAAGATGAAGACAGT 1256
||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1348 AGGAAGAAAACGAAACAGACAATGATCAGTGAGCTGGATGAGTTCGAAGATGAAGACAGT 1407
Query 1257 GACTTGGACATAGAGAACGACCCAATCATCCGAGCCATTGAGAATGAGAATAAATGACAA 1316
|| ||| |||||||||||||||||||| ||| |||||||||||||||||||||| |||||
Sbjct 1408 GATTTGTACATAGAGAACGACCCAATCGTCCAAGCCATTGAGAATGAGAATAAAAGACAA 1467
Query 1317 TGAGAGAAATCATGTTT 1333
|||||||| ||| ||||
Sbjct 1468 TGAGAGAACTCAAGTTT 1484
> AT1G67460.1 | Symbols: | Minichromosome maintenance (MCM2/3/5)
family protein | chr1:25269626-25271861 REVERSE LENGTH=1620
Length=1620
Score = 728 bits (394), Expect = 0.0
Identities = 893/1126 (79%), Gaps = 65/1126 (6%)
Strand=Plus/Plus
Query 110 TCAAGCTATCGGTACTGTTGCCACAGCTCAAGC-GAACTTTATGCGCGTCATTGTTCAAG 168
|||||| |||||||| | ||||| |||| ||| | ||| |||||||||||||||||||
Sbjct 475 TCAAGCCATCGGTACAATCGCCACCGCTCTAGCTG-ACTACATGCGCGTCATTGTTCAAG 533
Query 169 ATGTAGCTAGTTCTGTGAAGAGTGGTGATGATGATTCGTCTAAGACTGGTGTTGAGTTGC 228
||||| || | ||| | | | | || || || | | ||||| ||| ||||||||||
Sbjct 534 ATGTACCT-G-AGAGTG-ATAAT-G-GA-GAGGA-T-G-ATAAGATTGGCGTTGAGTTGC 584
Query 229 TTTGTGTAGTGAG--AGCTGTGTTGAAGAAGATACGAAGGAGAGTT-TTGGTTGGAGATA 285
||||||| ||||| || | | ||||||||||| | |||| ||| || ||||| ||||
Sbjct 585 TTTGTGTGGTGAGAAAG-T-TACTGAAGAAGATAGGTAGGACTGTTCTT-GTTGGTGATA 641
Query 286 AGGTTCTTGTTGGATCTA-TTGATTGGGTTGATAGAAGAG-GAATGATTGA-GAATGTGT 342
| ||||| ||| ||| | |||||||||||||| | |||| || |||| | |||||||
Sbjct 642 AAGTTCTCGTT-GATAAAGTTGATTGGGTTGATCGGAGAGCTAA-GATT-ATCAATGTGT 698
Query 343 TTCATCGCCG-CTCGGAGATTTTGGATCCACCGGTTGCGAACGTTGATCA-TTTGCTGGT 400
|| |||| | ||||||| |||||||||||||||||||||| |||||||| || | || |
Sbjct 699 TTGATCG-AGTCTCGGAGGTTTTGGATCCACCGGTTGCGAATGTTGATCACTTAG-TGAT 756
Query 401 TC--TTTTCTCTTTGGATCAACCGAA-ACTGGAGCTGTTCACTCTCACTAGGTTCTTGGT 457
|| ||||||| || |||||||| || | | || | || || || ||||||||||||||
Sbjct 757 TCTGTTTTCTC-TT-GATCAACCTAAGA-TTGATCCATTTACACTTACTAGGTTCTTGGT 813
Query 458 GGAAGCTGAATCTACTCGAATTCCATTAACACTTGCTTTGAATAAAACTGAACTCATTAG 517
|||||||||||||| | |||||| | | ||| |||||||||| ||| ||||||| | |
Sbjct 814 GGAAGCTGAATCTATTGGAATTCGAATCACAGTTGCTTTGAACAAATGTGAACTCGTCA- 872
Query 518 C-GAAGAGGAATTGGAATCTTGGAAGATAAGATTGCGTGGATGGAACTATGAACCATTGT 576
| |||||||| |||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct 873 CTCAAGAGGAAGTGGAATCTTGGAAGATAAGATTGCGTAGTTGGAACTATGAACCATTGT 932
Query 577 TTTGTAGTGTGGGAACTAAAGACGGACTTGATGCCATTGCGTTTGTTCTGCGGAATCAGA 636
| ||||||||||||||||||| |||| |||||| ||||||||| ||||| |||||||
Sbjct 933 TCTGTAGTGTGGGAACTAAAGTCGGAATTGATGAGATTGCGTTTAACCTGCGAAATCAGA 992
Query 637 CTTCTGTGATTGTTGGACCTAGTGGTGTAGGAAAGTCGAGCTTAATCAACATTTTGAGGA 696
||||||| |||||||||||||||||||| |||||||| ||||||||||| || ||||| |
Sbjct 993 CTTCTGTCATTGTTGGACCTAGTGGTGTTGGAAAGTCCAGCTTAATCAATATATTGAGAA 1052
Query 697 GTAACCATGGTGGTGGTGTGGTGGAAGATGA-GAATTGGTTTGAGCCT---ATGTTA-G- 750
||| | | ||||||| | | || | || ||| || ||| ||||| | | |
Sbjct 1053 GTAGCTACGGTGGTGACAT--TA-AACACGAAGAAGTG-TTTAAGCCTGCCAAAACAAGA 1108
Query 751 -G--TAATAA---GTGGTTTGATGATCAGCGAGTAGGGGAAGTGTCT-AGTAGAAGTGGT 803
| ||| || ||||||||| |||||| | ||||||||||| || | ||||| |||
Sbjct 1109 AGAATAAAAAAAAGTGGTTTGAAGATCAGAGTGTAGGGGAAGTTTCACA-TAGAAATGGA 1167
Query 804 CGAGGTAAACATACAACACGAAATGTATCGCTACTGCCGATTTCTGAAGGTGGTTACCTC 863
|||||||||||||||| ||||||||| ||||||| || ||| || |||||| |||||
Sbjct 1168 AGAGGTAAACATACAACCCGAAATGTAACGCTACTTCCTCTTTGTGGAGGTGGATACCTT 1227
Query 864 GCTGATACACCTGGCTTTAACCAGCCTA-GTTTGCTGAAAGTAACAAAGCAATCACTTGC 922
|||||||| |||||||||||| ||| || ||| ||||||||||||||||||| |||| |
Sbjct 1228 GCTGATACTCCTGGCTTTAACAAGCATAAGTT-GCTGAAAGTAACAAAGCAAAAACTTCC 1286
Query 923 ACAC-TGCTTTCCTGAGATACGGAACATGATTGAGGGCGAAAAATGTGGATTCAGAG-AT 980
| || ||||||||||||||||| ||| | ||||| | ||||||| || || || ||
Sbjct 1287 -CTTGTGTTTTCCTGAGATACGGAAAATGGTCGAGGGAGGAAAATGTAAATACA-AGGAT 1344
Query 981 TGCTTGCATATT-GGGGAACCAGGATGTGTTGTGAAAGGTGATTGGGAAAGGTATCCTTA 1039
|||| |||| || |||| || ||| |||| ||||| ||||| ||||||||||||| |||
Sbjct 1345 TGCTCGCAT-TTAGGGGTACAAGGCTGTGCTGTGACAGGTGGTTGGGAAAGGTATGATTA 1403
Query 1040 CTACTTACAATTGCTTGATGAGATCAGAATC-AGGGAAGAGTTTCAGCTTAGGACTTTTG 1098
|| |||||| ||||||||||||||| |||| | | | |||| ||| |||| || | ||
Sbjct 1404 CTTTTTACAACTGCTTGATGAGATCAAAATCGATG-AGGAGTGTCAACTTAAGAAGTATG 1462
Query 1099 GAACCAAAAAGGAAGATGATGTTAGGTACAAGGTGGGAGACATGGGTGTGAAACATGCTG 1158
||||||||| ||||| || |||||| | | | ||||||| | ||||||| |||| |||
Sbjct 1463 GAACCAAAAGGGAAGGTGGTGTTAGTTGCCACATGGGAGAGAAGGGTGTGGAACAAGCTA 1522
Query 1159 AACCGCGGCTA-ATGCCTAAGAAGCATAGGAGAGAGTCAAGGAAGA 1203
|||| ||| || || || |||||| |||||||||| || |||||||
Sbjct 1523 AACCACGGATAGATCCC-AAGAAGTATAGGAGAGAATCGAGGAAGA 1567
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65612112315
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5