BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg925995
Length=2624
Score E
Sequences producing significant alignments: (Bits) Value
AT1G72270.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Ribosome ... 2385 0.0
AT4G27010.2 | Symbols: | INVOLVED IN: biological_process unkno... 1489 0.0
> AT1G72270.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Ribosome
60S biogenesis N-terminal (InterPro:IPR021714); BEST Arabidopsis
thaliana protein match is: unknown protein (TAIR:AT4G27010.1);
Has 772 Blast hits to 657 proteins in 120 species:
Archae - 0; Bacteria - 0; Metazoa - 344; Fungi - 94; Plants
- 322; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).
| chr1:27199733-27211161 REVERSE LENGTH=8577
Length=8577
Score = 2385 bits (1291), Expect = 0.0
Identities = 1558/1680 (93%), Gaps = 45/1680 (3%)
Strand=Plus/Plus
Query 153 AAGGGAGAAACTGGCAGCGATTTGTTGCGTCTTTATTTCCAGAGCTCACCCAACTTTACT 212
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1483 AAGGGAGAAACTGGCAGCGATTTGTTGCGTCTTTATTTCCAGAGCTCACCCAACTTTACT 1542
Query 213 GAGTTTCTGGAGGCATGGAAGCTTCATCATGGAAAACAAGGACTTTCCTATATATTCTCG 272
||| |||| ||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1543 GAGCTTCTCGAGGCATGGAATCTTCATCATGGAAAACAAGGACTTTCCTATATATTCTCG 1602
Query 273 CTTATCCAGACGATTTTGAGTCATCCAGAGGGAAAATGTAGATCATCTGATATTGGAAGA 332
||||||||||| |||||||||||||||||||| || | ||| |||||||||||||||
Sbjct 1603 CTTATCCAGACCATTTTGAGTCATCCAGAGGG--AA---A-ATCTTCTGATATTGGAAGA 1656
Query 333 GCTCTTGACCAGTTTGGTAGGTTACTTATCGAAGAAAAACTCGAT-GACATTTACAAAGC 391
||||||||||||||| ||||||||||||||||| ||||||| | | ||||||||||||||
Sbjct 1657 GCTCTTGACCAGTTTTGTAGGTTACTTATCGAAAAAAAACT-GTTAGACATTTACAAAGC 1715
Query 392 ATTATCGAATAGCAAAGAGCCAAAACAACAGAATGCTGCACTTTCACTGTTGGCTTCTAT 451
|||||| || | |||| | | ||||||||| ||||||||||| |||||||||||
Sbjct 1716 ATTATCCAACA-CAAA-A--C--GTTTACAGAATGCCGCACTTTCACTCTTGGCTTCTAT 1769
Query 452 CGTTAGACGTGGTCCAGGCATGGCATCACAAATGGCTAGGACATTTGATTTTCAGGGTTT 511
|||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||
Sbjct 1770 CGTTAGACGTGGTCCAGGCATGGCATCAGAAATGGCTAGGACATTTGATTTTCATGGTTT 1829
Query 512 CGAAAAACAGGCAGTGTATAAAAAACCGAGGCGGGCTTTTGTTGAATTTGCAATATCATT 571
| ||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1830 CCCAAAACAGGC------------ACCGAGGCGGGCTTTTGTTGAATTTGCAATATCATT 1877
Query 572 CCTTGAAGTTGGGAAGCCTTCATTAGTAAAGTCTATCTTAAAGCAGAAGCAACTCTATTC 631
|||| |||||||||||||||| ||| |||||||||||||| || ||||||||||||||||
Sbjct 1878 CCTTCAAGTTGGGAAGCCTTCCTTATTAAAGTCTATCTTAGAGAAGAAGCAACTCTATTC 1937
Query 632 TCAACTCCTACAAGGCCTTGGGGAAGACGATGACGACACTCTGGCTTCTGTCTTGTCTAC 691
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1938 TCAACTCCTACAAGGCCTTGAGGAAGACGATGACGACACTCTGGCTTCTGTCTTGTCTAC 1997
Query 692 GTTCAAGGACAAGATCCTTGTTGAAGAATCATCGCTTAGTCCTGGGCTTATGAGTGCTCT 751
|| || ||||||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 1998 CTTGAAAGACAAGATCCTTGTTCAAGAATCATCGCTTAGTCCTCGGCTTATGAGTGCTCT 2057
Query 752 CTTTGGACCCAATACACTAAAGCAGCTAGTCATCATTTCAGAAAGAGAGTATGGTGGGAT 811
|||||||||||| |||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 2058 CTTTGGACCCAAAACACTAGAGCAGCTAGTCATCATTTCAGAAAGAGAGGATGGTGGGAT 2117
Query 812 TGTGAATGAGTTGGCCTATGATGTTCTTGTTAAAGTTTGTACGGACCCCTCTAATGGATT 871
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 2118 TGTGAATGAGTTGGCCTATGATGTTCTTGTTAAAGTTTGTACAGACCCCTCTAATGGATT 2177
Query 872 GATGCCAGATGCAGAGAGAAAAGGCAATATAAAACGACTACTTGCGCTCATGAAGAGCTT 931
||||||||||||| | ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 2178 GATGCCAGATGCATACAGAAAAGGCAATATAAAACGACTACTTGCCCTCATGAAGAGCTT 2237
Query 932 GAAAGCTACAGAAATTGGTTATCCCAGGGATTTGCTGATAGCCATTATTAGGGGTAGACC 991
|||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 2238 GAAAGCTACAGAAACTGGTTATCCCAGGGATTTGCTTTTAGCCATTATTAGGGGTAGACC 2297
Query 992 GTCTTTAGCTTCTGCTTTCTTGGATGAATTTCCATACAATGTGGAAGATTTTACATCACC 1051
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 2298 GTCTTTAGCTTCTGCTTTCTTTGATGAATTTCCATACAATGTGGAAGATTTTACATCACC 2357
Query 1052 TTACTGGTTTTCTTCTATTTCCCTGGCAGCAAATTTGGTATCGTCAGTAAGAATTTCATC 1111
|||||||||||| |||||||||||||||||| ||||||||||||| |||||||| |||||
Sbjct 2358 TTACTGGTTTTCATCTATTTCCCTGGCAGCAGATTTGGTATCGTCTGTAAGAATGTCATC 2417
Query 1112 TTCTTTTGACTTTCTCAACCCAGATCAACCTCCTTCTGGTGGTTCAGAGGTCCATACTAT 1171
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 2418 TTCTTTTGACTTTCTCAACCCAGATAAACCTCCTTCTGGTGGTTCAGAGGTCCATACTAT 2477
Query 1172 CATGAAATGCATATGCCCCCGACCATTTAGCCGGTTGTTGATCGTTAGAGGGATGCAACA 1231
|||||||||||||||||||||||||||||||| || |||||||| |||||||||||| ||
Sbjct 2478 CATGAAATGCATATGCCCCCGACCATTTAGCCAGTCGTTGATCGCTAGAGGGATGCACCA 2537
Query 1232 TTCTGATTTCCTTGTGAAACATGGGACTTTGAGATTTCTCTGGGAGACGCTGAGGCTGTG 1291
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2538 TTCTGTTTTCCTTGTGAAACATGGGACTTTGAGATTTCTCTGGGAGACGCTGAGGCTGTG 2597
Query 1292 GGATTCTTTTGTTACTGCTTGGAAACTTTACTCGTCTCGTAGCTGCTCTGTTGACCAAAT 1351
||||||||||||||||||||||||||||| | ||| | | | | | |||||||
Sbjct 2598 GGATTCTTTTGTTACTGCTTGGAAACTTT----G-CTC-T-G-T--T--G---ACCAAAT 2642
Query 1352 TCAGGCTTCTCTTGAGCGGGATATCATAGGTGAGGTGATAAGCTTTTTTCC-AGATTTCC 1410
|||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 2643 TCAGGCTTCTCTTGAGCGGGATATCATAGGTGAGGTGATAAG-TTTTTTCCCAGATTTCC 2701
Query 1411 AGCTGTTATGGAACATACTAAAGGTGTCTCAAAAGCTGCCTTTGAAGAGAAAAGAAGGGT 1470
|| ||||||||| | |||||||||||||||||||||| ||||||||||||||| || ||
Sbjct 2702 AGGTGTTATGGACCGTACTAAAGGTGTCTCAAAAGCTATCTTTGAAGAGAAAAGCAGAGT 2761
Query 1471 TGGATATTGAATTAGTAGATAGAGAAAAGCGTTTAAAGAGATCTGAAAAGGATGTTGTGG 1530
||||||||| ||||||||||||| ||||||||||||||| |||||| | || |||| |||
Sbjct 2762 TGGATATTGGATTAGTAGATAGAAAAAAGCGTTTAAAGACATCTGAGATGGCTGTTTTGG 2821
Query 1531 AAGAATTGGCT-GATGATATGGTCATTGGTGGGCTAGGTTCTGATAGTAATATCCTTTTG 1589
||||||||||| | |||||||||||||||||||||||||||||||| |||||| |||||
Sbjct 2822 AAGAATTGGCTAG-TGATATGGTCATTGGTGGGCTAGGTTCTGATACAAATATCTTTTTG 2880
Query 1590 GAAGAGGATACTGGGGATGCTCAGTTAACAGATCAGGCAGATGCTGAAAACGAATATCTT 1649
|||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||
Sbjct 2881 GAAGAGGATACTGGGGATGCTCAGTTGACAGATCAGGAAGATGCTGAAAACGAATATCTT 2940
Query 1650 GGGATCGTTTCAGAAATTTGGGGTTCAGAGTTTTGTTCTAAGCCTATTGCTTTGGTAGAT 1709
||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| |||
Sbjct 2941 GGGATCGTTTCAGAAATTTGGGGTTCAGAGTTTTGTTCTAAGCCTATCGCTTCGGTCGAT 3000
Query 1710 GAAACAGAGATGTTCTTTCACATAAAGCTCCTGGATACCCTCGGGATTTATGTGCGTTCT 1769
||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 3001 GAAGCAGAGATGTTCTTTCAGATAAAGCTCCTGGATACCCTCGGGATTTATGTGCGTTCT 3060
Query 1770 GTGCCTAATGTGCCTGAAGGGTTGTTTGATGTCTTCATGAAATTTCTGAGCAGTTCTTCA 1829
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3061 GTGCCTAATGTGCCTAAAGGGTTGTTTGATGTCTTCATGAAATTTCTGAGCAGTTCTTCA 3120
Score = 54.7 bits (29), Expect = 5e-06
Identities = 29/29 (100%), Gaps = 0/29 (0%)
Strand=Plus/Plus
Query 2173 TTACGGCTGTTGGAAATACTTTATTCCAG 2201
|||||||||||||||||||||||||||||
Sbjct 3122 TTACGGCTGTTGGAAATACTTTATTCCAG 3150
> AT4G27010.2 | Symbols: | INVOLVED IN: biological_process unknown;
LOCATED IN: cellular_component unknown; EXPRESSED IN:
20 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS
InterPro DOMAIN/s: Ribosome 60S biogenesis N-terminal
(InterPro:IPR021714); BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT1G72270.1); Has 312 Blast hits
to 226 proteins in 103 species: Archae - 0; Bacteria - 2; Metazoa
- 129; Fungi - 90; Plants - 83; Viruses - 0; Other Eukaryotes
- 8 (source: NCBI BLink). | chr4:13557974-13568296
FORWARD LENGTH=7880
Length=7880
Score = 1489 bits (806), Expect = 0.0
Identities = 1425/1715 (83%), Gaps = 77/1715 (4%)
Strand=Plus/Plus
Query 545 GGCTTTTGTTGAATTTGCAATATCATTCCTTGAAGTTGGGAAGCCTTCATTAGTAAAG-T 603
||| ||||||| |||||||||||||||||||||||||||||||||| ||| || ||| |
Sbjct 776 GGCATTTGTTGGATTTGCAATATCATTCCTTGAAGTTGGGAAGCCTGGATT-GTTAAGCT 834
Query 604 CTA-TCTTAAAGCAGAAGCAACTCTATTCTCAACTCCTACAAGGCCTTGGGGAAGACGAT 662
| | | ||||| ||||| || | || || || |||| | |||||||||| |||| |||
Sbjct 835 C-AGTGTTAAATAAGAAGGAAATGTACTCGAAAGTCCTGCCAGGCCTTGGGAAAGATGAT 893
Query 663 GACGACACTCTGGCTTCTGTCTTGTCTACGTTCAAGGACAAGATCCTTGTTGAAGAATCA 722
|| |||||| |||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 894 GATGACACTGTGGCTTCTGTCTTGTCTACGTTAAAGGATAAGATCCTTGTTGAAGAATCA 953
Query 723 TCGCTTAGTCCTGGGCTTATGAGTGCTCTCTTTGGACCCAAT-ACACTAAAGCAGCTAGT 781
| || |||||| || | ||||| ||| |||||| | || |||||||| ||||
Sbjct 954 TTAATTTCTCCTGGTCTAAGGAGTGTTCTTTTTGGAATTG-TGACGCTAAAGCATCTAGC 1012
Query 782 CATCATTTCAGAAAGAGAGTATGGTGGGATTGTGAATGAGTTGGCCTATGATGTTCTTGT 841
|| |||||||| ||||||| ||| |||||||||||||||||||||| |||||||||||||
Sbjct 1013 CAGCATTTCAGCAAGAGAGGATGCTGGGATTGTGAATGAGTTGGCCCATGATGTTCTTGT 1072
Query 842 TAAAGTTTGTACGGACCCCTCTAATGGATTGATGCCAGATGCAGAGAGAAA----AG-G- 895
||||||||| || |||||||||||||||||||||||||||||| ||||||| || |
Sbjct 1073 TAAAGTTTGCACAGACCCCTCTAATGGATTGATGCCAGATGCAAAGAGAAAGTTGAGAGG 1132
Query 896 CAATA-TAAAACGACTACTTGCGCTCATGAAGAGCTTGAAAGCTA-CAGAAATTGGTTAT 953
|||| | | | ||||||| |||||||||| | |||| ||| | ||||||||||||||
Sbjct 1133 CAATTCTGACA-GACTACTAATGCTCATGAAGGGGTTGAGAGC-AGCAGAAATTGGTTAT 1190
Query 954 CCCAGGGATTTGCTGATAGCCATTATTAGGGGTAGACCGTCTTTAGCTTCTGCTTTCTTG 1013
| |||||||||||| |||||||| |||||||||||||||| |||||||| | |||||||
Sbjct 1191 CACAGGGATTTGCTTCTAGCCATTGTTAGGGGTAGACCGTCGTTAGCTTCAGATTTCTTG 1250
Query 1014 GATGAATTTCCATACAATGTGGAAGATTTTACATCACCTTACTGGTTTTCTTCTATTTCC 1073
|| || |||||||||||||||||||||||| ||||||| | |||||||||||||||||||
Sbjct 1251 GACGAGTTTCCATACAATGTGGAAGATTTTTCATCACCATCCTGGTTTTCTTCTATTTCC 1310
Query 1074 CTGGCAGCAAATTTGGTATCGTCAGTAAGAATTTCATCTTCTTTTGACTTTCTCAACCCA 1133
|||||||||||||||||||||||||||||| ||||| |||||||||||||||||| |||
Sbjct 1311 TTGGCAGCAAATTTGGTATCGTCAGTAAGAACTTCATGTTCTTTTGACTTTCTCAATCCA 1370
Query 1134 GATCAAC---CT-C-C-T--T-CTGGTGGTTCAGAGGTCCATACTATCATGAAATGCATA 1184
||||||| || | | | | ||||||| ||||| || || ||||||||||||||||||
Sbjct 1371 GATCAACGTGCTACACCTCCTTCTGGTGGCTCAGATGTTCAGACTATCATGAAATGCATA 1430
Query 1185 TGCCCCCGACCATTTAGCCGGTTGTTGATCGTTAGAGGGATGCAACATTCTGATTTCCTT 1244
|||||||||||||||||||||| ||||| || |||||||| |||||||||||| |||
Sbjct 1431 TGCCCCCGACCATTTAGCCGGTCACTGATCACTAAAGGGATGCTACATTCTGATTTTCTT 1490
Query 1245 GTGAAACATGGGACTTTGAGATTTCTCTGGGAGACGCTGAGGCTGTGGGATTCTTTTGTT 1304
|||||||||||||| ||||||||||||| ||||||||||||||||| |||||| ||| ||
Sbjct 1491 GTGAAACATGGGACCTTGAGATTTCTCTTGGAGACGCTGAGGCTGTTGGATTCGTTTCTT 1550
Query 1305 ACTGCTTGGAAACTTTACTCGTCTCGTAGCTGCTCTGTTGACCAAATTCAGGCTTCTCTT 1364
||||||||||| |||| || |||| ||| ||||| ||||| ||||||||| |||||||
Sbjct 1551 ACTGCTTGGAACCTTTGTTCATCTCATAGATGCTCGGTTGAGCAAATTCAGATTTCTCTT 1610
Query 1365 GAGCGGGATATCATAGGTGAGGTGATAAGCTTTTTTCCAGATTTCCAGCTGTTATGGAAC 1424
|||||| | |||| ||||| |||| || ||||||||||||| |||| |||||| ||
Sbjct 1611 GAGCGGAACGTCATGGGTGAAGTGAGCAGTTTTTTTCCAGATTCCCAGGTGTTATTGATT 1670
Query 1425 ATACT-AA--------A-GGT----GT----CTCAAAAGCTGCCTTTGAAGAGAAAAGAA 1466
|||| || | ||| || ||||||||||| | ||||||||| ||| |
Sbjct 1671 GTACTGAAGTCTCTGGACGGTTCTAGTGGAACTCAAAAGCTGTCATTGAAGAGAGAAGCA 1730
Query 1467 GGGTTGGATATTGAATTAGTAG-ATAGAGAAAAGCGT-TTAAAGAGATCTGAAAAGGATG 1524
| |||||||| || |||||||| | ||| |||| || |||| | |||| || |||||||
Sbjct 1731 GAGTTGGATAGTGGATTAGTAGGA-AGAAAAAAACGCATTAA-GCGATCGGAGAAGGATG 1788
Query 1525 TTGTGGAAGAATTGGCTGATGATATGGTCATTGGTGGGCTAGGTTCTGATAGTA-ATATC 1583
|| |||||||| ||||| |||||| |||||||||||| |||||||||||| | |||||
Sbjct 1789 TTTTGGAAGAAGAGGCTGTTGATATTGTCATTGGTGGGGTAGGTTCTGATAA-AGATATC 1847
Query 1584 CTTTTGGAAGAGGATACTGGGGATGCTCAGT-TAACAGATCAGGCAGATGCTGAAAACGA 1642
|||||| ||||||| | ||||||||| | | |||||||||| |||||||||||| ||
Sbjct 1848 TTTTTGGCTGAGGATAATATGGATGCTCA-TATGACAGATCAGGAAGATGCTGAAAAAGA 1906
Query 1643 ATATCTTGGGATCGTTTCAGAAATTTGGGGTTCAGAGTTTTGTTCTAAGCCTATTGCTTT 1702
|||||||||||| |||||||| |||||| ||||||| |||||||||| ||||||| ||
Sbjct 1907 ATATCTTGGGATTGTTTCAGATATTTGGATTTCAGAGCTTTGTTCTAACCCTATTGATTC 1966
Query 1703 GGTAGATGAAACAGAGATGT-TCTTTCACATAAAGCTCCTGGATACCCTCGGGATTTATG 1761
||| || ||| ||||||||| | |||||||||||||| |||||| ||||| ||||||||
Sbjct 1967 GGTCGAAGAAGCAGAGATGTGT-TTTCACATAAAGCTTCTGGATGCCCTCAAGATTTATG 2025
Query 1762 TGCGTTCTGTGCCTAATGTGCCTGAAGGGTTGTTTGATGTCTTCATGAAATTTCTGAGCA 1821
||||| |||| ||||||| || |||||| | ||||||| |||||||||||||||||||||
Sbjct 2026 TGCGTGCTGTACCTAATGAGCTTGAAGGATCGTTTGATATCTTCATGAAATTTCTGAGCA 2085
Query 1822 GTTCTT-CAGGTTTGCCAGCTGAATTGCAGAGAGCTCTGTTGTCTTTACTGAA-TGAATG 1879
||||| | ||| |||||| |||| ||||||| ||||| |||||||| || || ||| |
Sbjct 2086 ATTCTTTC-GGTATGCCAGTTGAACTGCAGAGGGCTCTCTTGTCTTTGCT-AAGTGAGTA 2143
Query 1880 CATCAGTTGGAGGCCAAAGTCTCAATTTGAGAGAGGTCCTAGAAGAATTCCACCACTTAT 1939
||||||||||| ||||||||||||| ||| |||||||||| ||||||||||||||||||
Sbjct 2144 CATCAGTTGGACGCCAAAGTCTCAAAGTGACAGAGGTCCTACAAGAATTCCACCACTTAT 2203
Query 1940 GTTCAAGCATTTGCATGTATTTAT-AACTTTGTTACTTCTTTCATCACACGACGAGGTGA 1998
| ||||||||||| ||| || || || |||||||||| ||||| ||||| ||| |||||
Sbjct 2204 GCACAAGCATTTGCGTGTGTTCATTAA-TTTGTTACTTTTTTCACCACACAACGGGGTGA 2262
Query 1999 AGGTTCTATCATATAATTTAGCACG-GGTATCTATGACCAGCACCGGTGCATTTGACATA 2057
||| |||| | || ||||||||| | || | |||||| ||| || ||||||||||| | |
Sbjct 2263 AGGATCTAGCGTACAATTTAGCA-GTGGCAGCTATGAACAGTACTGGTGCATTTGAAA-A 2320
Query 2058 -AATCCAAGTGAAATTGAG-GCATGGTTCCGGTTTCTACCAAGTGTTGGAAAGATTAAAC 2115
|| ||||||||||||| | ||||||||| |||||||||| || ||| ||||||||||
Sbjct 2321 CAACCCAAGTGAAATTG-GTGCATGGTTCTTGTTTCTACCATGTTTTGAAAAGATTAAAT 2379
Query 2116 TACCTCTTAA--T---G-----T-T-CAGAGCATATCATCATTTGTCATCTCCTTTTTAT 2163
|||||||| | | | | | |||||||| |||||| ||||| | ||||||||||
Sbjct 2380 TACCTCTTGAGCTTCAGGAGGCTGTACAGAGCATGTCATCAGTTGTCGTGTCCTTTTTAT 2439
Query 2164 GTGATGCAGTTACGGCTGTTGGAAATACTTTATTC 2198
||||||||||| || |||||||||||| |||||||
Sbjct 2440 GTGATGCAGTTTCGACTGTTGGAAATAATTTATTC 2474
Score = 438 bits (237), Expect = 1e-121
Identities = 338/385 (88%), Gaps = 13/385 (3%)
Strand=Plus/Plus
Query 153 AAGGGAGAAACTGGCAGCGATTTGTTGCGTCTTTATTTCCAGAGCTCACCCAACTTTACT 212
||||||||||| || |||||||||||||||||||||||||||||||||| |||||| ||
Sbjct 357 AAGGGAGAAACCGGTGGCGATTTGTTGCGTCTTTATTTCCAGAGCTCACCAAACTTTGCT 416
Query 213 GAGTTTCTGGAGGCATGGAAGCTTC-ATCATGGAAAACAAGGACTT-TCCTATATATTCT 270
||| |||| |||||||||||||||| | |||| |||||||||| || |||||||||||||
Sbjct 417 GAGCTTCTTGAGGCATGGAAGCTTCGA-CATGAAAAACAAGGA-TTGTCCTATATATTCT 474
Query 271 CGCTTATCCAGACGATTTTGAGTCATCCAGAGGGAAAATG-TAGATCATCTGATATTGGA 329
|||||||||||||||||||||||||||||||||||||| | ||||||| |||||||||||
Sbjct 475 CGCTTATCCAGACGATTTTGAGTCATCCAGAGGGAAAA-GATAGATCAACTGATATTGGA 533
Query 330 AGAGCTCTTGACCAGTTTGGTAGGTTACTTATCGAAGAAAAACTCGATGACATTTACAAA 389
|||||| ||||||||||||||||||||||| | ||||||||| | ||||| |||||||||
Sbjct 534 AGAGCTATTGACCAGTTTGGTAGGTTACTTGTTGAAGAAAAATTGGATGATATTTACAAA 593
Query 390 GCATTATCGAATAGCAAAGAGCCAAAACAACAGAATGCTGCACTTTCACTGTTGGCTTCT 449
| ||| ||| ||||||||| |||||||||| ||||||||||||| |||| |||||
Sbjct 594 GAATT---GAACAGCAAAGAGGGAAAACAACAGTCTGCTGCACTTTCATTGTTAGCTTCG 650
Query 450 ATCGTTAGACGTGGTCCAGGCATGGCATCACAAATGGCTAGGACA-TTTGATTTTCAGGG 508
|| ||||||||||||||||| ||||||||| | || |||| || | ||||||||| ||||
Sbjct 651 ATTGTTAGACGTGGTCCAGGAATGGCATCAGAGATAGCTAAGA-AGTTTGATTTTAAGGG 709
Query 509 TTTCGAAAAAC-AGGCAGTGTATAA 532
||| | ||||| || ||| ||||||
Sbjct 710 TTTTGCAAAACTAG-CAGAGTATAA 733
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 130283550971
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5