BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg925997
Length=440
Score E
Sequences producing significant alignments: (Bits) Value
AT2G45630.2 | Symbols: | D-isomer specific 2-hydroxyacid dehyd... 479 1e-134
AT5G28463.1 | Symbols: | unknown protein; Has 30201 Blast hits... 206 2e-52
> AT2G45630.2 | Symbols: | D-isomer specific 2-hydroxyacid dehydrogenase
family protein | chr2:18796000-18797089 FORWARD LENGTH=1017
Length=1017
Score = 479 bits (259), Expect = 1e-134
Identities = 323/355 (91%), Gaps = 0/355 (0%)
Strand=Plus/Plus
Query 49 GCAACGATGACGACGAGCTCTTCCACCGAGAATCTTCCACGTGTCCTCATCGTCAAACGT 108
||||||||| |||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 28 GCAACGATGGCGACGAGCTCTTCCACCGAGAAACTGCCACGTGTCCTCATCGTCAAACGT 87
Query 109 CCCGCCGCCATGGCTGTGTTCGGCGACAGATTTGTGGCCTCCACCAAGTTTGAGATCTTG 168
|||| ||||||||||||||| |||||| |||| || |||||||||||||| |||||| |
Sbjct 88 CCCGACGCCATGGCTGTGTTAGGCGACGGATTCGTCGCCTCCACCAAGTTCGAGATCCTC 147
Query 169 AAAGCCTTCGAGTCTCCGCTTCCTCTCCCTGAATTATTGGCCAATCACTCTGACTCCGTC 228
|||||||||||||||||||||||||| |||||||| |||||| |||||||||||||| ||
Sbjct 148 AAAGCCTTCGAGTCTCCGCTTCCTCTTCCTGAATTCTTGGCCTATCACTCTGACTCCATC 207
Query 229 TCCGTCGTTATAGCCCATGTAGCTGCTCCCGTCACAACCGATCTGATTCGCCTCCTCCCG 288
|||| | ||||||||| |||||||||||| |||||| |||||||||||||| |||||||
Sbjct 208 TCCGCCATTATAGCCCCTGTAGCTGCTCCGGTCACAGCCGATCTGATTCGCATCCTCCCT 267
Query 289 AATCTTCGCTTCGTTGGTACAACCAGCGCCGGTGTTGACCACGTCGACTTAGTGGAGTGT 348
||||||||||| |||| ||| ||||||||||| |||||||| || |||||||| ||||||
Sbjct 268 AATCTTCGCTTGGTTGTTACTACCAGCGCCGGCGTTGACCATGTTGACTTAGTTGAGTGT 327
Query 349 CGTCATCGTGGCATCTCCGTCGCCAACGCAGGCTCAAGCTTCTCGGAAGATGTCG 403
|||| ||| |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 328 CGTCGTCGAGGCATCTCCGTCGCCAACGCTGGCTCAAGCTTCTCGGAAGATGTCG 382
> AT5G28463.1 | Symbols: | unknown protein; Has 30201 Blast hits
to 17322 proteins in 780 species: Archae - 12; Bacteria -
1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses
- 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:10379446-10380973
FORWARD LENGTH=1121
Length=1121
Score = 206 bits (111), Expect = 2e-52
Identities = 153/174 (88%), Gaps = 0/174 (0%)
Strand=Plus/Minus
Query 114 CGCCATGGCTGTGTTCGGCGACAGATTTGTGGCCTCCACCAAGTTTGAGATCTTGAAAGC 173
|||||||||||||||||||||| ||||||| ||||||||||||||||||||| | |||||
Sbjct 238 CGCCATGGCTGTGTTCGGCGACGGATTTGTCGCCTCCACCAAGTTTGAGATCCTCAAAGC 179
Query 174 CTTCGAGTCTCCGCTTCCTCTCCCTGAATTATTGGCCAATCACTCTGACTCCGTCTCCGT 233
||| || ||| | ||| ||| |||||||| ||||||||||||||||||||||||||||
Sbjct 178 CTTTGACTCTTAGTTTCTTCTGCCTGAATTCTTGGCCAATCACTCTGACTCCGTCTCCGC 119
Query 234 CGTTATAGCCCATGTAGCTGCTCCCGTCACAACCGATCTGATTCGCCTCCTCCC 287
| ||||||||| |||| |||||| |||||| | |||||| |||||||||||||
Sbjct 118 CATTATAGCCCTTGTACCTGCTCTCGTCACTGCAGATCTGTTTCGCCTCCTCCC 65
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 20911383584
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5