BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg925998
Length=1171
Score E
Sequences producing significant alignments: (Bits) Value
AT1G67480.1 | Symbols: | Galactose oxidase/kelch repeat superf... 1784 0.0
> AT1G67480.1 | Symbols: | Galactose oxidase/kelch repeat superfamily
protein | chr1:25276295-25278718 FORWARD LENGTH=1856
Length=1856
Score = 1784 bits (966), Expect = 0.0
Identities = 1105/1173 (94%), Gaps = 5/1173 (0%)
Strand=Plus/Plus
Query 1 TTCAAAAGATTGGTCGAAAGATGCAAGCGTTTGCTTTAAGTGGGAAGAAAAGGATTGTGA 60
||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||
Sbjct 517 TTCAAAAGATTGGTCTAAAGATGCAAGCTTTTGCTTTAAGTGGGAAGAAAAGGATTGTGA 576
Query 61 ATCACGGCATGTGTTTCTCAAAAGGAAATCTTGATCTCGGTTCACGGTTGTCTGAGAATT 120
|||||||||||||||| || |||||||||||||||||||||||||| |||||||||||||
Sbjct 577 ATCACGGCATGTGTTTTTCCAAAGGAAATCTTGATCTCGGTTCACGCTTGTCTGAGAATT 636
Query 121 TTATGGATGATCCTTTGATCCCGGGATTGCCTGATGATGTAGCGAAGCAATGCT-TGGCT 179
|||||||||||||||||||||||||||||||||||||||| || ||||| || | | ||
Sbjct 637 TTATGGATGATCCTTTGATCCCGGGATTGCCTGATGATGTCGCTAAGCAGTG-TCTAGCG 695
Query 180 CTTGTTCCGCGTGCTAGGTTCCCTTCAATGGGAAGTGTATGCAAGAAATGGAGGTTTGTT 239
||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 696 CTTGTTCCGCGTGCTAGGTTCCCATCCATGGGAAGTGTATGCAAGAAATGGAGGTTTGTT 755
Query 240 GTCCAGAGCAAAGAGTTTATCACCGTTAGAAGACTCGCCGGTATGCTTGAGGAGTGGCTT 299
|||||||||||||||||||| || || ||||||||||| |||||||||||||||||||||
Sbjct 756 GTCCAGAGCAAAGAGTTTATTACTGTGAGAAGACTCGCTGGTATGCTTGAGGAGTGGCTT 815
Query 300 TATGTCTTAACGACGAATGCTGGTGGGAAAGAGAGCCAG-TGGGAGGTGATGGACTGTTT 358
||||||||||||| |||||||||||||||||| | || | ||||||||||||||||||||
Sbjct 816 TATGTCTTAACGATGAATGCTGGTGGGAAAGATAACC-GATGGGAGGTGATGGACTGTTT 874
Query 359 GGGACAGAAGCTATCATCTCTTCCACCAATGCCTGGTCCTGAAAAAACAGGGTTTAAGGT 418
||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||
Sbjct 875 GGGACAGAAGCTATCATCTCTTCCACCGATGCCTGGTCCTGCAAAAACAGGGTTTAAGGT 934
Query 419 TGTTGTGGTTGATGGGAAACTTCTTGTTATCGCTGGTTGTTCTAAGATCAACGGTTCTCT 478
||||||||||||||||||||||||||| || |||||||||| || |||||||||||| ||
Sbjct 935 TGTTGTGGTTGATGGGAAACTTCTTGTCATTGCTGGTTGTTGTATGATCAACGGTTCGCT 994
Query 479 TGTTGCATCTGCTGATGTTTATCAGTATGATACTTGCCTCAATAGCTGGAGTAGACTAGC 538
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 995 TGTTGCATCTGCTGATGTTTATCAGTATGATACATGCCTCAATAGCTGGAGTAGACTAGC 1054
Query 539 AGACCTGGAGGTAGCTCGGTATGATTTCGCTTGTGCTGAGGTGAATGGACTTATTTATGT 598
||||||||||||||||||||||||||||||||||||||||||||| || | | |||||||
Sbjct 1055 AGACCTGGAGGTAGCTCGGTATGATTTCGCTTGTGCTGAGGTGAACGGGCATGTTTATGT 1114
Query 599 GGTGGGAGGTCACGGGGTAGATGGCGAGAGTCTGTCAAGTGCAGAGGTGTATGATCCTGA 658
||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1115 TGTGGGAGGTCATGGGGTAGATGGTGAGAGTCTGTCAAGTGCAGAGGTGTATGATCCTGA 1174
Query 659 TACGGGTACATGGACTTTCATAGAGTCTCTGAGGCGTCCGAGGTGGGGCTGTTTCGCTAG 718
||| ||||||||||||||||||||||| | ||||||||||||||||| |||||||||||
Sbjct 1175 GACGTGTACATGGACTTTCATAGAGTCTTTAAGGCGTCCGAGGTGGGGTTGTTTCGCTAG 1234
Query 719 CGGCTTCAACGGGAAGCTATATGTGATGGGTGGGAGATCCAATTTTACTATTGGAAACTC 778
|| ||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 1235 CGCCTTCAACGGGAAGCTATATGTGATGGGTGGGAGATCCAACTTCACTATTGGAAACTC 1294
Query 779 AAAACTTCTTGATGTGTACAACACTCAATGCGGCTCCTGGCATGGAAGCAAAAACGGTTT 838
|||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 1295 AAAACTTCTTGATGTGTACAACACTCAATGTGGCTCCTGGCATGGTAGCAAAAACGGTTT 1354
Query 839 AACCATGGTCACAGCTCATGTTGAAGTAGGGAAAAAGCTGTTCTGTATCGATTGGAAGAA 898
||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1355 AACGATGGTCACAGCTCATGTTGAAGTAGGGAAAAAGCTGTTCTGTATCGACTGGAAGAA 1414
Query 899 CCAGAGAAAGATGTCGGTGTTCAATGCGGAAGACGAAACCTGGGAAGTGGTGTCTCTTCC 958
||| | ||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1415 CCACCGGAAGATGTCGGTGTTCAATGCGGAAGACGAAACCTGGGAAGTGGTGGCTCTTCC 1474
Query 959 GCTGTCAGGAAGCTCGAGGGCCGGGTTTCAGTTTGGTAAGCTGAGTGGGAAGCTTCTACT 1018
||| ||||||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 1475 GCTATCAGGAAGCTCGAGGGCCGGGTTTCAGTTTGGTAAGCTGAGTGGGAAGCTTTTGCT 1534
Query 1019 ATTTTCGTCTCAGGAAGAAACCGGGCAATGCACTTTACTGTATGACCCGGATGCTTCACC 1078
||| |||||||||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 1535 ATTCTCGTCTCAGGAAGAAACCGGTCAATGTACTTTACTGTATGACCCGGATGCTTCACC 1594
Query 1079 AGGGACACAGTGGAAAACATCTGAGATAAAACTGTCTGGTTCTTGCGTATGCAGCGTCAC 1138
||| |||||||||||||| |||||||| ||||| |||||||||||||||||||| |||||
Sbjct 1595 AGGCACACAGTGGAAAACGTCTGAGATCAAACTCTCTGGTTCTTGCGTATGCAGTGTCAC 1654
Query 1139 AATCACAGCCTGATTGATTGCTATTGTGTTGTT 1171
|||||||||||||||||| | |||||||||||
Sbjct 1655 AATCACAGCCTGATTGATACC-ATTGTGTTGTT 1686
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57479624025
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5