BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg926011
Length=226
Score E
Sequences producing significant alignments: (Bits) Value
AT1G44170.1 | Symbols: ALDH3H1, ALDH4 | aldehyde dehydrogenase ... 313 5e-85
> AT1G44170.1 | Symbols: ALDH3H1, ALDH4 | aldehyde dehydrogenase
3H1 | chr1:16796400-16800321 REVERSE LENGTH=1683
Length=1683
Score = 313 bits (169), Expect = 5e-85
Identities = 203/220 (92%), Gaps = 0/220 (0%)
Strand=Plus/Plus
Query 7 AGAGATTTTGAGGAATGGCGGCGAAGAAGATGTTTGGAGCGGCGGATGCGAGTATTTTGG 66
|||||| |||||||||||| ||||||||| | |||||| ||||||| ||||||| |||||
Sbjct 51 AGAGATATTGAGGAATGGCTGCGAAGAAGGTTTTTGGATCGGCGGAAGCGAGTAATTTGG 110
Query 67 TGACGGATCTTCGTCGGAGTTTTGATGATTGTGTGACTCGTGGTTATGAATGGAGAGTGA 126
||||||| ||||||||||||||||||||| ||||||| ||||||||||||||||||||||
Sbjct 111 TGACGGAGCTTCGTCGGAGTTTTGATGATGGTGTGACACGTGGTTATGAATGGAGAGTGA 170
Query 127 CTCAGCTTAAGAAACTTTTGATTATTTGTGATAATCATGAGCTTGAGATCGTCGCGGCTC 186
|||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||
Sbjct 171 CTCAGCTTAAGAAACTGATGATTATTTGTGATAATCATGAGCCTGAGATCGTCGCGGCTC 230
Query 187 TTCGCGACGATCTTTGAAAACCTGAGCTTGAATCTTCTGT 226
||||||| |||||| | || ||||||||||||||||||||
Sbjct 231 TTCGCGATGATCTTGGTAAGCCTGAGCTTGAATCTTCTGT 270
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 10154085298
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5