BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg926022
Length=787
Score E
Sequences producing significant alignments: (Bits) Value
AT1G67623.1 | Symbols: | F-box family protein | chr1:25342111-... 800 0.0
> AT1G67623.1 | Symbols: | F-box family protein | chr1:25342111-25343243
FORWARD LENGTH=891
Length=891
Score = 800 bits (433), Expect = 0.0
Identities = 637/731 (87%), Gaps = 31/731 (4%)
Strand=Plus/Plus
Query 22 TGGTATCCTCCT-TTTCGCCTTCGTCTTCTTCTATTAGGAGGAAGTC-Taaa-aaaa-CA 77
||||||||| | ||| || | |||||||||||||||||| || || ||| |||| ||
Sbjct 5 TGGTATCCTTGTCTTT-GCATGCGTCTTCTTCTATTAGGA--AA-TCGAAAACAAAAGCA 60
Query 78 AGAATT-TGTCTCGATTCTTTACCAGAAGATCTTCTTGTGGAGATTTCTTCATGCACCGG 136
|| || ||||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 61 AG-CTTATGTCTCGATTCTTTACCAGAAGATCTTCTCGTGGAGATTTCTTCATGTACCGG 119
Query 137 AGCTTCTTCCTTGTCAGCGGTTCGTAATCTCAGAGTAGTTTCGAAATCGTTTCGACGTAT 196
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 120 AGCTTCTTCCTTGTCAGCGGTTCGTAATCTCAGACTAGTTTCGAAATCGTTTCGACGTAT 179
Query 197 CTGTGATGAAC-GATACGTTTTCTACCGACTTTCCCTCAAAGAAATCGA-TTATCCCCCT 254
|||||||||| | || |||||||||||||| ||||||||||||||||| || || |||
Sbjct 180 CTGTGATGAAAAG-TATGTTTTCTACCGACTATCCCTCAAAGAAATCGAATT-TCTCCCA 237
Query 255 TGGCATCAGAACAGTG-AATATTTCTTCGAGAGATGT-CGCAATAGTGGAAACCCCGAAG 312
|||||| ||||||||| || ||| | ||||||||||| | | | ||| ||||||||||||
Sbjct 238 TGGCATGAGAACAGTGCAAAATT-CATCGAGAGATGTAC-CGAGAGTAGAAACCCCGAAG 295
Query 313 CGTTGTATC-GCAAAGGATTCATGAACTACTTTCGAGATAATCTTAAACAC-GAAGGACT 370
|||||| || | ||||||||||| ||||| ||||||||||| ||| || || || |||||
Sbjct 296 CGTTGTTTCAG-AAAGGATTCATTAACTATTTTCGAGATAAACTTCAAGACCGA-GGACT 353
Query 371 CAAATATTTAGCTGAAGCTGCGGAAAAAGGAAACAGAGAAGCAAATTATGTCTACGGGTT 430
| |||||||||||||||||||||||||||| | || ||||||||| |||||||||||| |
Sbjct 354 CGAATATTTAGCTGAAGCTGCGGAAAAAGGTATCAAAGAAGCAAAATATGTCTACGGGGT 413
Query 431 GATTCTAATCTGTCTTGGAGACAAAACAAAACAAAAGGGTTT-GAAGATCTTGTCTTCTG 489
|||||||||||||||||||| ||||||||||||||||||||| || ||||||||||||||
Sbjct 414 GATTCTAATCTGTCTTGGAGGCAAAACAAAACAAAAGGGTTTCGA-GATCTTGTCTTCTG 472
Query 490 TTATAAAGCCGTTGATGTCAACTACAATGGAGGAGCTGGTGGAACTTCGATACAAGATTA 549
||||||||| ||||||||||||||||||| | ||| |||||||| ||||||||||||||
Sbjct 473 TTATAAAGCAGTTGATGTCAACTACAATGAATGAGTTGGTGGAATTTCGATACAAGATTC 532
Query 550 AAAAGATTAGAGACAGCGTTTT-G-TGGCCTAACAACCCGGTGATGGAACGACTCAAAAC 607
||||||||||| || | ||||| | ||| || ||||| ||||| |||||| |||||||||
Sbjct 533 AAAAGATTAGATAC-G-GTTTTTGGTGGTCTGACAACACGGTGGTGGAACAACTCAAAAC 590
Query 608 AGTGTACGTTCGAGAGAAGTGCGAGTGCGATTGTAAAACCAGGATGTTACTA---GTAAG 664
|| |||||| | ||||||||| |||||||||||||||||||||||||| || ||||
Sbjct 591 AGCCTACGTTAGTGAGAAGTGCAAGTGCGATTGTAAAACCAGGATGTTATTATTAGTAAT 650
Query 665 GAATCATGGTTGGCATCGATACGGTGATGACACCGACATGAATATTTCTTCTGCTTGTGA 724
||||| ||||||| || || ||||||||| |||||| || || ||||||||||||||||
Sbjct 651 GAATCGTGGTTGGTATTTATTCGGTGATGAAACCGACTTGGATTTTTCTTCTGCTTGTGA 710
Query 725 GTTTTGTCTGT 735
||| | |||||
Sbjct 711 GTTATATCTGT 721
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38278420014
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5