BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg926029

Length=341
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G15650.1 | Symbols: RGP2, ATRGP2 | reversibly glycosylated p...   156    1e-37
  AT3G02230.1 | Symbols: RGP1, ATRGP1 | reversibly glycosylated p...   134    7e-31
  AT5G40300.1 | Symbols:  | Uncharacterised protein family (UPF04...  89.8    2e-17


> AT5G15650.1 | Symbols: RGP2, ATRGP2 | reversibly glycosylated 
polypeptide 2 | chr5:5092157-5094494 FORWARD LENGTH=1530
Length=1530

 Score =  156 bits (84),  Expect = 1e-37
 Identities = 90/93 (97%), Gaps = 0/93 (0%)
 Strand=Plus/Plus

Query  159  GATTTGATTGGCCCAGCTATGTACTTTGGTCTCATGGGTGATGGTCAGCCTATTGGTCGC  218
            |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| 
Sbjct  716  GATTTGATTGGCCCGGCTATGTACTTTGGTCTCATGGGTGATGGTCAGCCTATTGGTCGT  775

Query  219  TACGACGACATGTGGGCTGGTTGGTGCATCAAG  251
            |||||||| ||||||||||||||||||||||||
Sbjct  776  TACGACGATATGTGGGCTGGTTGGTGCATCAAG  808


 Score =  110 bits (59),  Expect = 1e-23
 Identities = 69/73 (95%), Gaps = 3/73 (4%)
 Strand=Plus/Plus

Query  267   AAGCTTGGGATGAGCTTAACCCACCAGCAGCCAATGGCAAAGCTTGAG--CAGTAATGAG  324
             ||||||||||||||||||||||||||||||||| ||||||||||||||  ||||| ||||
Sbjct  1083  AAGCTTGGGATGAGCTTAACCCACCAGCAGCCAGTGGCAAAGCTTGAGAGCAGTA-TGAG  1141

Query  325   CCaaaaagaaaaa  337
             |||||||||||||
Sbjct  1142  CCAAAAAGAAAAA  1154


> AT3G02230.1 | Symbols: RGP1, ATRGP1 | reversibly glycosylated 
polypeptide 1 | chr3:415393-417547 FORWARD LENGTH=1387
Length=1387

 Score =  134 bits (72),  Expect = 7e-31
 Identities = 82/87 (94%), Gaps = 0/87 (0%)
 Strand=Plus/Plus

Query  165  ATTGGCCCAGCTATGTACTTTGGTCTCATGGGTGATGGTCAGCCTATTGGTCGCTACGAC  224
            ||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  746  ATTGGTCCGGCTATGTACTTTGGTCTCATGGGTGATGGTCAGCCTATTGGTCGCTACGAC  805

Query  225  GACATGTGGGCTGGTTGGTGCATCAAG  251
            || ||||||||||| ||||| ||||||
Sbjct  806  GATATGTGGGCTGGATGGTGTATCAAG  832


> AT5G40300.1 | Symbols:  | Uncharacterised protein family (UPF0497) 
| chr5:16110688-16112968 FORWARD LENGTH=1170
Length=1170

 Score = 89.8 bits (48),  Expect = 2e-17
 Identities = 57/61 (93%), Gaps = 1/61 (2%)
 Strand=Plus/Plus

Query  31   TCCTGATTCACCAAGCGTCTCTTCAAATCCCCGATAGCCATGGATCTTCTCCTCACATGA  90
            |||||||||||||| | ||||||| |||||||||||||||||||||||||||||||| ||
Sbjct  234  TCCTGATTCACCAACCCTCTCTTC-AATCCCCGATAGCCATGGATCTTCTCCTCACACGA  292

Query  91   T  91
            |
Sbjct  293  T  293



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 15934876433


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5