BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg926030
Length=1112
Score E
Sequences producing significant alignments: (Bits) Value
AT1G67660.1 | Symbols: | Restriction endonuclease, type II-lik... 1764 0.0
> AT1G67660.1 | Symbols: | Restriction endonuclease, type II-like
superfamily protein | chr1:25363535-25365229 FORWARD LENGTH=1280
Length=1280
Score = 1764 bits (955), Expect = 0.0
Identities = 1063/1115 (95%), Gaps = 8/1115 (1%)
Strand=Plus/Plus
Query 1 TCGAATGTGATTTGTGGTTGATGATGATGAGGCTAGTTCAAGTATCGTCTACTGAATCCA 60
||||||||||||| |||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 33 TCGAATGTGATTTTTGGTTGATGATGATGAGGCTAGTTCAAGTATCTTCCACTGAATCCA 92
Query 61 TTTCTTCTATTTCAGCTTCCTCGGCCCGGAATGGAGGAGTTCTCTACCCGAAGTGTGGTT 120
||||||||||||| |||||||||||||||||||| |||||||||||| |||| ||||||
Sbjct 93 TTTCTTCTATTTCCGCTTCCTCGGCCCGGAATGGTGGAGTTCTCTACTTGAAGCGTGGTT 152
Query 121 CTGTCTGTGGTTTATGTAGAGTCTTGAAGCCGAATAAAGTTGCT-TACAACAGCATGATT 179
|||||||| | |||||||||||||||||||||||||||||||| | |||||| ||||||
Sbjct 153 CTGTCTGT-G--TATGTAGAGTCTTGAAGCCGAATAAAGTTGCTCT-CAACAGTATGATT 208
Query 180 CTTTCAGCTATGAGGACTTGCTCAATTTCTGGGTTCCATACTCATCTTCCCAAGTCAAGC 239
|||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 209 CTTTCAGCTATGAGGACTTGCTCAATCTCTGGGTTCCATACTCATCTTCCGAAGTCAAGC 268
Query 240 GGTTCAGTTTCTTCGAGAAAGAGGTTTTCTTCTACTGCCTTATCAGTCATCACTCAAACC 299
|||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||
Sbjct 269 GGTTCAGTTTCTTCGAGAAAGAGGTTTTCTTCTACTGCTTTATCACTCATCACTCAAACC 328
Query 300 GCTTCACCATTTGCTCATCCCCGTTCGTCAGTAATTGTGTCAAGCCTTCTCTCCCCATCT 359
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 329 ATTTCACCATTTGCTCATCCCCGTTCATCAGTAATTGTGTCAAGCCTTCTCTCCCCATCT 388
Query 360 GATATCCCTCAGAAATCAGAAGAATGGTTTGCTTTACGGAAAGACAAGTTAACCACAAGT 419
||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||
Sbjct 389 GATATCCCTCAGAAATCTGAAGAATGGTTTGCTTTAAGGAAAGACAAGTTAACCACAAGT 448
Query 420 ACATTCAGTACAGCGCTTGGTTTTTGGAAAGGAACCCGGCGTGCCGAGCTCTGGCATGAA 479
||||||||||||||||| || ||||||||||||| |||||||||||||||||||||||||
Sbjct 449 ACATTCAGTACAGCGCTGGGGTTTTGGAAAGGAAACCGGCGTGCCGAGCTCTGGCATGAA 508
Query 480 AAGGTTTATGATTCAGATTCACGAGTCGTTGAGGAGTCTGCACGGTTTGCTATGAACTGG 539
|||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||
Sbjct 509 AAGGTTTATGATTCAGATGCACGAGTTGTTGAGGAGTCTGCACGGTTTGCTATGAACTGG 568
Query 540 GGTGTACAGATGGAATCAGCTGCGATAGAAAGGTACAAACGAATAATGGGTTGTGAGGTC 599
|||||||| ||||||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct 569 GGTGTACAAATGGAATCATCTGCGATAGAAAGGTACAAAAGAATAATGGGTTGTGAGGTT 628
Query 600 GGGACAATGGGATTTGCTATTCACTCCAACGAGCAGTTTCACTGGCTTGGTGCTTCCCCG 659
|| |||||||||||||||||||||||||| ||| | |||||||||||||| ||||| |||
Sbjct 629 GGAACAATGGGATTTGCTATTCACTCCAATGAGGAATTTCACTGGCTTGGCGCTTCACCG 688
Query 660 GATGGAATTCTTGATTGCTTTGGTATTCTAGAAGTGAAATGTCCATATAACAAAGGGAAA 719
|||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 689 GATGGAATCCTCGATTGCTTTGGTATTCTAGAAGTGAAATGTCCATATAACAAAGGGAAA 748
Query 720 ACCGAAACTGTATTACCGTGGAAAAAAGTGCCCTACTATTACATGCCTCAGCTGCAGGGT 779
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 749 ACCGAAACTGTATTACCCTGGAAAAAAGTGCCCTACTATTACATGCCTCAGCTGCAGGGT 808
Query 780 CAAATGGAGATAATGGACCGGGAATGGGTCAACTTATATTGCTGGACACGAAACGGAAGC 839
|||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 809 CAAATGGAGATAATGGACCGGGAATGGGTCAACTTATACTGCTGGACACGAAATGGAAGC 868
Query 840 ACGGTCTTTC-GTGTGATGAGAGACCGAAGCTATTGGAGAATCATTCATGATGTATTAAG 898
||||| |||| |||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 869 ACGGT-TTTCCGTGTGATGAGAGACCGAAGCTATTGGAGAATCATACATGATGTATTAAG 927
Query 899 GGAGTTCTGGTGGGAGAGTGTGATTCCTGCAAGGGAGGCTTTGTTGTTAGGGAAAGAGGG 958
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 928 GGAGTTCTGGTGGGAGAGTGTGATTCCTGCAAGGGAGGCTTTGTTGTTAGGGAAAGAGGA 987
Query 959 TGAGGAGGTGAAAAAGTATGAGCCAACATCTACACATAAGCGAACCAAGCTTGCCATAGC 1018
||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 988 TGAGGAGGTGAAAAAGTATGAGCCAACATCTACGCATAAACGAACCAAGCTTGCCATAGC 1047
Query 1019 TAAAAGCATAAATTTGGCTGCGGAATCAAAACTAGTATGCAGAGAAATCGCTGATCATGT 1078
||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1048 TAAAAGCCTAAATTTGGCTGCGGAATCAAAACTAGTATGCAGAGAAATTGCTGATCATGT 1107
Query 1079 CGAGTTCTTTTAGATGAA-TAGGAGAATGATGATT 1112
|||||||||||||||||| ||||||||||||||||
Sbjct 1108 CGAGTTCTTTTAGATGAAATAGGAGAATGATGATT 1142
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54517791870
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5