BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg926035
Length=1633
Score E
Sequences producing significant alignments: (Bits) Value
AT1G67710.1 | Symbols: ARR11 | response regulator 11 | chr1:253... 2470 0.0
AT3G16857.2 | Symbols: ARR1, RR1 | response regulator 1 | chr3:... 124 2e-27
AT4G31920.1 | Symbols: ARR10, RR10 | response regulator 10 | ch... 76.8 6e-13
> AT1G67710.1 | Symbols: ARR11 | response regulator 11 | chr1:25376751-25379144
REVERSE LENGTH=2048
Length=2048
Score = 2470 bits (1337), Expect = 0.0
Identities = 1545/1639 (94%), Gaps = 40/1639 (2%)
Strand=Plus/Plus
Query 3 CTTGTTTTTGCCGGCGATCATGGAGAAAAGCGGCTTCTCTCCCGTCGGTCTAAGGGTTCT 62
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 221 CTTGTTTTCGCCGGCGATCATGGAGAAAAGCGGCTTCTCTCCCGTCGGTCTAAGGGTTCT 280
Query 63 TGTGGTGGATGATGACCCAACTTGGCTCAAGATTCTCGAGAAAATGCTCAAGAAGTGCTC 122
||| || || ||||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 281 TGTCGTAGACGATGATCCAACTTGGCTCAAGATTCTCGAGAAAATGCTCAAGAAGTGTTC 340
Query 123 TTACGAAGTAACGACCTGTGGGTTAGCTAGAGAGGCTCTGAGGTTGCTGAGGGAGCGTAA 182
||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||
Sbjct 341 TTACGAAGTAACGACCTGTGGATTAGCTAGAGAGGCTTTGAGGTTGCTGAGGGAGCGTAA 400
Query 183 AGACGGATACGATATCGTGATCAGCGATGTGAACATGCCTGACATGGATGGTTTCAAGCT 242
||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 401 AGATGGATATGATATCGTGATCAGCGATGTGAACATGCCTGACATGGATGGTTTCAAGCT 460
Query 243 TCTTGAGCATGTTGGTCTTGAATTAGACCTCCCTGTAATAATGATGTCGGTGGATGGAGA 302
|||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 461 TCTTGAGCATGTTGGTCTTGAATTAGACCTCCCTGTAATAATGATGTCGGTGGACGGCGA 520
Query 303 AACAAGCAGAGTAATGAAAGGAGTGCAACACGGAGCGTGTGATTACCTCTTGAAGCCGAT 362
||||||| |||| ||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 521 AACAAGCCGAGTGATGAAGGGAGTGCAACACGGAGCTTGTGATTACCTCTTGAAGCCGAT 580
Query 363 AAGAATGAAGGAGTTGAAGATTATATGGCAACATGTTCTGAGAAAGAAGCTTCAAGAAGT 422
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 581 AAGAATGAAGGAGTTAAAGATTATATGGCAACATGTTCTGAGAAAGAAGCTTCAAGAAGT 640
Query 423 GAGAGATATCGAAGGCTGCGGATACGAAGGAGGAG-GTGATTGGATCACTCGATACGATG 481
|||||||||||||||||| |||||||||||||||| | ||||||||||||||||||||||
Sbjct 641 GAGAGATATCGAAGGCTGTGGATACGAAGGAGGAGCG-GATTGGATCACTCGATACGATG 699
Query 482 AAGCACATTTTCTTGGAGGTGGTGAAGATGTTTCTTTTGGTAAAAAGAGAAAAGACTTTG 541
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 700 AAGCACATTTTCTTGGAGGTGGTGAAGATGTTTCTTTTGGGAAAAAGAGAAAAGACTTTG 759
Query 542 ACTTTGAGAAGAAGCTTCTTCAAGATGAGAGTGATCCATCATCTTCTTCTTCCAAGAAAG 601
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 760 ACTTTGAGAAGAAGCTTCTTCAAGATGAGAGTGATCCATCATCTTCTTCTTCCAAGAAAG 819
Query 602 CTAGGGTTGTGTGGTCTTTTGAGCTTCATCAGAAGTTTGTCAACGCCGTTAACCAAATCG 661
|||| ||||| |||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 820 CTAGAGTTGTTTGGTCTTTTGAGCTTCATCATAAGTTTGTCAACGCCGTTAACCAAATCG 879
Query 662 GATGCGATCACAAAGCTGGTCCCAAGAAGATATTGGACCTCATGAATGTTCCATGGCTCA 721
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 880 GATGCGATCACAAAGCTGGTCCCAAGAAGATATTGGATCTCATGAATGTTCCATGGCTCA 939
Query 722 CTAGAGAGAATGTTGCAAGCCACCTTCAGAAATATAGACTTTACCTGAGCAGATTAGAGA 781
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 940 CTAGAGAAAATGTTGCAAGCCACCTTCAGAAATATAGACTTTACCTGAGCAGATTAGAGA 999
Query 782 AAGGAAAGGAGCTCAAGTGTTATTCTGGTGGTGTGAAGAATATGGATTCATCTCCAAAAG 841
||||||||||||||||||||||||| ||||| ||||||||| |||||||||||||||||
Sbjct 1000 AAGGAAAGGAGCTCAAGTGTTATTCAGGTGGCGTGAAGAATGCGGATTCATCTCCAAAAG 1059
Query 842 ATGTTGAAGTAAATTCAGGCTACCAAAGCCCTGGGAAGAGCAGCTATGTATTCTCTGGAG 901
|||| ||||| ||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1060 ATGTCGAAGTGAATTCAGGCTACCAAAGCCCTGGGAGGAGCAGCTATGTATTCTCTGGAG 1119
Query 902 GCAATTCTCTGATCCAAAAAGTAACAGAGATTGATCCAAAGCCACTTGCTTCAGCTTCTC 961
| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1120 GAAATTCTCTGATCCAAAAAGCAACAGAGATTGATCCAAAGCCACTTGCTTCAGCTTCTT 1179
Query 962 TGTCTGACCCCAACACCGATGTGATCATGCCTCCGAAAACAAAAAAGACGCGTATAGGCT 1021
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1180 TGTCTGACCTCAACACCGATGTGATCATGCCTCCGAAAACAAAAAAGACGCGTATAGGAT 1239
Query 1022 TTGATCCTCCCATATCCTCCTCCTCTGCGTTTGACTCTCTGCTTCCTTGGAATGATGTTC 1081
||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1240 TTGATCCTCCCAT-T--TCCTCCTCTGCGTTTGACTCTCTGCTTCCTTGGAATGATGTTC 1296
Query 1082 CTGAGA-CACTTGAATCGAAGCCGGTTCTATATGAGAATAGCTTTCTCCAGCAACAACCA 1140
| ||| | |||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1297 CAGAGGTC-CTTGAATCGAAGCCGGTTCTGTATGAGAATAGCTTTCTCCAGCAACAACCA 1355
Query 1141 TTGCCAAGTCAAAGTTCCTATGTTGCAAATTCTGTACCGTCTCTCATGGAAGAGGAGATG 1200
|||||||||||||||||||||||||||||||||| ||| ||||||||||| ||||| |||
Sbjct 1356 TTGCCAAGTCAAAGTTCCTATGTTGCAAATTCTGCACCATCTCTCATGGAGGAGGAAATG 1415
Query 1201 AAGCCTCCTTATGAGACACCAGCAGGAGGCAGTAGTGTGAATGTAGATGAGTTTCTCATG 1260
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1416 AAGCCTCCTTATGAGACACCAGCAGGAGGCAGTAGTGTGAATGCAGATGAGTTTCTCATG 1475
Query 1261 CCGCAAGACAAGAACCCTACTGTAACCCTTCAAGATTTGGATCCCTCTGCCATATCCAAC 1320
|| |||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1476 CCACAAGACAAGATCCCTACTGTAACCCTTCAAGATTTGGATCCCTCTGCCAT------- 1528
Query 1321 ATGAAGCTTCAGGAGTTTAGCTCAAATGTAACCAACAACACAGAGGCGATTCTGAGAAGC 1380
|||||| |||||||| | || | | || ||||||||||||||||||
Sbjct 1529 --GAAGCTGCAGGAGTT---C--AA------C-A-CA-----GAGGCGATTCTGAGAAGC 1568
Query 1381 TTGAACTGGGAAC--C-AGAATCACATCATTCTGCTTCTTTAGACACTGACTTAGACTTG 1437
||||||||||||| | ||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1569 TTGAACTGGGAACTTCCAGAATCACATCATTCTGTTTCTTTAGACACTGACTTAGACTTG 1628
Query 1438 AGTTGGCTTCACGGCGAGCGTTTTCTTGCAAACACCGGACTCCAGTTTCAAGATTACAGT 1497
| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1629 ACTTGGCTTCAAGGCGAGCGTTTTCTTGCAAACACCGGACTCCAGTTTCAAGATTACAGT 1688
Query 1498 AGTAGCCCATCACTCCTATCTGAGCTCTCACCCCACCTT--T-GGTATGGAAACGAGCGG 1554
||||||||||||||||||||||||||| || |||||||| | |||||||||| ||||||
Sbjct 1689 AGTAGCCCATCACTCCTATCTGAGCTCCCAGCCCACCTTAATTGGTATGGAAATGAGCGG 1748
Query 1555 CTGCCTGACCCTGACGAGTATTCCTTCATGGTAGACCAAGGTTTATTCATATCTTAACCT 1614
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1749 CTGCCTGACCCTGACGAGTATTCCTTCATGGTAGACCAAGGTTTATTCATATCTTAACCT 1808
Query 1615 TGTTCCAATAACTTATTTT 1633
|||||||||||||| ||||
Sbjct 1809 TGTTCCAATAACTTCTTTT 1827
> AT3G16857.2 | Symbols: ARR1, RR1 | response regulator 1 | chr3:5755821-5759443
FORWARD LENGTH=2669
Length=2669
Score = 124 bits (67), Expect = 2e-27
Identities = 189/247 (77%), Gaps = 12/247 (5%)
Strand=Plus/Plus
Query 58 GTTCTTGTGGTGGATGATGACCCAACTTGGCTCAAGATTC-TCGAGAAAATGCTCAAGAA 116
|||||||| || || |||||||||||||| |||| || || | |||| ||||| | ||
Sbjct 407 GTTCTTGTCGTTGACGATGACCCAACTTGTCTCATGA-TCTTAGAGAGGATGCTTAGGAC 465
Query 117 GTGCTC-TTACGAAGTAACGACCTGTGGGTTAGCTAGAGA-GGC-TCTGAGGT-TGCTGA 172
|| || |||||||||||||| || ||| ||||| ||| | || | ||||
Sbjct 466 TTG-TCTTTACGAAGTAACGAAATGCAACAGAGC-AGAGATGGCAT-TG-TCTCTGCTCC 521
Query 173 GGGAGCGTAAAGACGGATACGATATCGTGATCAGCGATGTGAACATGCCTGACATGGATG 232
|| || ||| | |||| |||||| || ||||| ||||| | |||||||||||||| |
Sbjct 522 GGAAGAACAAACATGGATTCGATATAGTAATCAGTGATGTTCATATGCCTGACATGGACG 581
Query 233 GTTTCAAGCTTCTTGAGCATGTTGGTCTTGA-ATTAGACCTCCCTGTAATAATGATGTCG 291
|||||||||||||||||||||||||||| || || ||| | ||||| || ||||||||
Sbjct 582 GTTTCAAGCTTCTTGAGCATGTTGGTCTAGAGATG-GACTTACCTGTTATCATGATGTCT 640
Query 292 GTGGATG 298
| |||||
Sbjct 641 GCGGATG 647
> AT4G31920.1 | Symbols: ARR10, RR10 | response regulator 10 |
chr4:15444117-15446959 REVERSE LENGTH=2025
Length=2025
Score = 76.8 bits (41), Expect = 6e-13
Identities = 69/82 (84%), Gaps = 4/82 (5%)
Strand=Plus/Plus
Query 675 AGCTGGTCCCAAGAAGATAT-TGGACCTCATGAATGTT-CCATGGCTCACTAGAGAGAAT 732
||||| ||| || ||||| | | || || ||||||||| || |||||||||||||||
Sbjct 814 AGCTGTTCCAAAAAAGAT-TCTAGATCTGATGAATGTTGACA-AACTCACTAGAGAGAAT 871
Query 733 GTTGCAAGCCACCTTCAGAAAT 754
||||||||||||||||||||||
Sbjct 872 GTTGCAAGCCACCTTCAGAAAT 893
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 80672275815
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5