BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg926054
Length=1876
Score E
Sequences producing significant alignments: (Bits) Value
AT1G67840.1 | Symbols: CSK | chloroplast sensor kinase | chr1:2... 2933 0.0
> AT1G67840.1 | Symbols: CSK | chloroplast sensor kinase | chr1:25434102-25437075
FORWARD LENGTH=2126
Length=2126
Score = 2933 bits (1588), Expect = 0.0
Identities = 1784/1879 (95%), Gaps = 11/1879 (1%)
Strand=Plus/Plus
Query 3 CACTGTCGTCTTCCGTAGTGATGCTTCTTTCTGCAATCGCTTCTCAGACCCTTCTCTCAT 62
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 35 CACTGTCGTCTTCCGTAGTGATGCTTCTTTCTGCAATCGCTTCTCAGACCCTTCTCTCAT 94
Query 63 CAAACCCTAATCTACACTTCTCCAATTCTATTCCAAACCCTAGACCTTCTAATCCCTCCC 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 95 CAAACCCTAATCTACACTTCTCCAATTCTATTCCAAACCCTAGACCTTCTAATCCCTCCC 154
Query 123 TTAAGCTCCTCAATGCCTCTTCCTCTTCCTC-T--TCGTCGTC-T-T-CTATATTTACTC 176
|||||||||||||||||||||| |||||||| | |||||||| | | |||||||||| |
Sbjct 155 TTAAGCTCCTCAATGCCTCTTCTTCTTCCTCCTCCTCGTCGTCGTCTTCTATATTTACAC 214
Query 177 GCGGTCTCCGTTACGTGAACCACACTGTATCCAATGAAGAATCAGAACCCGGAGGAGGAG 236
|||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct 215 GCGGTCTCCGTTACGTAAACCACACTGTATCTAATGAAGAATCAGAACCCGGAGGAGGAG 274
Query 237 AGACCATGGTGGCTTCTGCCTCCGCTATAGCTTCCGCGATTCGTGGAGCTTCAACGACTC 296
|||||||||| |||||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct 275 AGACCATGGTTGCTTCTGCTTCCGCTATAGCTTCCGCGATTCGTGGAGCTTCAACAACTC 334
Query 297 CTGTAGAGTTCACACAGATGATTGAGAAAGACCATCTCAAGACGAAGATTATCTTGCCAA 356
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 335 CTGTAGAGTTCACACAGATGATTGAGAAAGACCATCTCAAGACTAAGATTATCTTGCCAA 394
Query 357 GTCCTGATTTTCAACGTCTTTGTCTCGAGCAATTAGATCTCTTTCGTCAAATCGTGGATC 416
|||||||||||||||| |||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 395 GTCCTGATTTTCAACGGCTTTGTCTTGAGCAATTAGATCTCTTTCGTCAAATCGTTGATC 454
Query 417 CAAACGCAGTCCTCTCGATATATGTAAGACCAGCTGGTAGCTATGTGATGGATCGATTAG 476
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 455 CAAACGCAGTACTCTCGATATATGTAAGACCAGCTGGTAGCTATGTGATGGATCGATTAG 514
Query 477 AGCTACGTCGTGTCACTTGTTACCCGAGTGTTAGTGCTGGAGACGTTGTGATCTTAGTCG 536
|| | ||||||||||||||||| || ||||||| |||||||||||||||||||||||| |
Sbjct 515 AGTTGCGTCGTGTCACTTGTTATCCAAGTGTTAATGCTGGAGACGTTGTGATCTTAGTTG 574
Query 537 GAAACTTTGGTATCCCCGCCGGTCTTCGAGCTGCTGAAGCATCACTTTCTAGTCAACAAG 596
|||||||||||||||| || ||||| ||||| ||||||||||||||||||||||||||||
Sbjct 575 GAAACTTTGGTATCCCTGCGGGTCTACGAGCAGCTGAAGCATCACTTTCTAGTCAACAAG 634
Query 597 TAGAACTTGTGAACAAACATAGAGCTGCTGTGTTTCCGATGGTGAAACATCCGTTTGTTG 656
|||||||||||| ||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 635 TAGAACTTGTGAGTAAACATAGAGCTGCTGTGTTTCCAATGGTGAAACACCCGTTTGTTG 694
Query 657 TCGGTTTCTTGGTTGCTGAGTTACCGGTAGAAGCTgaggaggaggaggaggaggagaagg 716
||||||||||||||||||||||||| |||||||| ||||||||||||||||||||| |
Sbjct 695 TCGGTTTCTTGGTTGCTGAGTTACCAGTAGAAGCCGAGGAGGAGGAGGAGGAGGAG--G- 751
Query 717 aagaggaAAAACTGCATGGTTTGAAGCATTTTCCTTCCCCTGAGGAAGCTTATGCTTTGC 776
|||||||||||| ||||||| | || || |||| ||||||||||||||||||||||||||
Sbjct 752 AAGAGGAAAAACCGCATGGTGTAAATCAGTTTCTTTCCCCTGAGGAAGCTTATGCTTTGC 811
Query 777 CTGCTTCAGCTAATACAAAATCACCTAAAGTTAAACGTCCTTCTGTTAAGGTTTTCACTG 836
||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 812 CTGCTTCAGCTAATACAAAATCACCTAGAGTTAAACTTCCTTCTGTTAAGGTTTTCACTG 871
Query 837 CAGAGCAGAGATCTTATGCCATTAATATTTCGCGGACTCTCGCTATGGCTTATGTCATGG 896
|||||||||||| ||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct 872 AAGAGCAGAGATCGTATGCGATTAATATTTCTCGGACTCTCGCTATGGCTTATGTCATGG 931
Query 897 ATCAGAAAACGATGTTACTTCAACAGTCATCTTGGCAAAACAATGTGAGGATGAGTAAGC 956
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 932 ATCAGAAAACAATGTTACTTCAACAGTCATCTTGGCAAAACAATGTGAGGATGAGTAAGC 991
Query 957 TAGTGGAGCAGATCCGTGGTCCGCTCTCTACCATCAGGACTTTAAGTAAAATGCTTTCAA 1016
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 992 TAGTGGAGCAGATCCGTGGTCCGCTCTCTACCATGAGGACTTTAAGTAAAATGCTTTCAA 1051
Query 1017 CTCACACTAAGAGAAATCAGATTTCACATGATATTGTCGAAGACTTAATAGTTCAAGGCG 1076
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 1052 CTCACACTAAGAGAAATCAGATTTCACATGATATTGTGGAAGACTTAATAGTTCAAGGTG 1111
Query 1077 ATCAAATAAAAGATACCCTTGAAGAACTTCAGGATGCAGTTCACTTGACAAAGGCTAATA 1136
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1112 ATCAAATAAAGGATACCCTTGAAGAACTTCAGGATGCAGTTCACTTGACAAAGGCTAATA 1171
Query 1137 TAGTCCGCCATAATGAAGAAGCCCTAAAGAAGATAAACAAAACACATAATGAAACAAGGA 1196
|||| ||||| || ||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct 1172 TAGTGCGCCACAACGAAGAAGCCCTAAAGAAGATAAATAAAACACACAATGAAACAAGGA 1231
Query 1197 GATCAAACTATGAACATAAGGACCCCATTGATGGGTCAAAAATCCCAAGTACACGCCTTT 1256
||||||| |||||||||||||||||||||||||| ||| ||||| |||||||||||||||
Sbjct 1232 GATCAAAGTATGAACATAAGGACCCCATTGATGGCTCACAAATCTCAAGTACACGCCTTT 1291
Query 1257 CCCTGGGTTCTGGATCAAATGATTCAGAAATGCCTATGCCACCTCTGGCCCTGGCACCCT 1316
|| |||||||||||| | |||||||||||||||||||||||||||| ||||||||||||
Sbjct 1292 CCTTGGGTTCTGGATTAGATGATTCAGAAATGCCTATGCCACCTCTTGCCCTGGCACCCC 1351
Query 1317 TACAAACACACAACATAAGACCATGCGACATTTCTTATGTGCTTTTAGATATGGTCGATA 1376
|||||| |||| ||||||||||||||||||||| |||||||||||||||||||||| |
Sbjct 1352 TACAAATGCACAGTATAAGACCATGCGACATTTCTAATGTGCTTTTAGATATGGTCGAGA 1411
Query 1377 CTGTGAGACCACTTGCCCTTACTCAGCAAAGAGTGGTGGAGCTAGGTGAGAACTCAGCTT 1436
||||||||||||| || ||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1412 CTGTGAGACCACTAGCACTTACTCAGCAAAGAGTAGTGGAGCTAGGTGAGAACTCAGCTT 1471
Query 1437 CCCTGCAAGTTGCTGTTGAAGAACCGGCTTTGAGGCAGGCTCTGAGCAACCTCATTGAAG 1496
||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| ||||
Sbjct 1472 CCCTGCAAGTTGCTGTTGAAGAACCAGCTTTGAGGCAAGCTCTGAGCAACCTCATCGAAG 1531
Query 1497 GTGCACTGTTGCGCACTCATGTTGGGGGAAAAGTTGAAATTCTGTCAACCAGAGCTCCTG 1556
||||| |||||||||||||||||||||| |||||||||||| |||| |||||||||||||
Sbjct 1532 GTGCATTGTTGCGCACTCATGTTGGGGGGAAAGTTGAAATTTTGTCGACCAGAGCTCCTG 1591
Query 1557 CTGGCGGTAGTCTGGTAGTAATTGATGATGATGGTCCTGATATGCGCTATATGACGCAAA 1616
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1592 CTGGCGGTAGTCTTGTAGTAATTGATGATGATGGTCCTGATATGCGCTATATGACGCAAA 1651
Query 1617 TGCATTCGCTGACACCATTTGGAGCAGAACTCCTTTCGGAAAACATGGTTGAAGACAATA 1676
|||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1652 TGCATTCGCTAACACCATTTGGAGCAGAACTCCTGTCGGAAAACATGGTTGAAGACAATA 1711
Query 1677 TGACATGGAACTTTGTGGCTGGGTTAACCGTAGCCCGAGAGATCCTGGAGAGTTACGGAT 1736
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1712 TGACATGGAACTTTGTGGCTGGTTTAACCGTAGCCCGAGAGATCCTGGAGAGTTACGGAT 1771
Query 1737 GTGTGATCAGGGTTATATCACCTCGCAGTTCCGATGCAGCCTTAGGAGCTGGTGGTACTC 1796
| |||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct 1772 GCGTGATCAGGGTTATATCACCTCGCAGCTCCGATGCAGCCTTAGGAGCTGGCGGTACTC 1831
Query 1797 GTGTAGAGCTCTGGCTGCCTGCCTTCCCTGCAGCAGTATCTGAAGCCAATGAAGCATAGG 1856
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1832 GTGTAGAGCTCTGGCTGCCTGCCTTCCCTGCAGCAGTATCTGAAGCCAATGAAGCATAGG 1891
Query 1857 CTT-CATTCCC-TCTCTTT 1873
|| |||| || |||||||
Sbjct 1892 TTTTCATTTCCATCTCTTT 1910
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 92871008250
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5