BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg926058

Length=273
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G67865.1 | Symbols:  | unknown protein; BEST Arabidopsis tha...   313    7e-85


> AT1G67865.1 | Symbols:  | unknown protein; BEST Arabidopsis thaliana 
protein match is: unknown protein (TAIR:AT1G67860.1); 
Has 13 Blast hits to 13 proteins in 2 species: Archae - 0; 
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 13; Viruses 
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:25446289-25446737 
REVERSE LENGTH=449
Length=449

 Score =  313 bits (169),  Expect = 7e-85
 Identities = 242/276 (88%), Gaps = 9/276 (3%)
 Strand=Plus/Plus

Query  1    GTAGATATATATAAAGAAAAATGTTTGATAAGCTTATCGGAGGGGTTGCCGGAGGGATTA  60
            ||||||| ||||||||||||||| |||||||||||||    |||||||||||||||||||
Sbjct  31   GTAGATAAATATAAAGAAAAATGCTTGATAAGCTTATTATTGGGGTTGCCGGAGGGATTA  90

Query  61   CCGGAGGGATTATTGGAACGGTCGATGGGTTTGCCAAAGGGGTC-GGAGTATGGCCCAGT  119
            ||||||||||| |||||||||||||||||||||||||||||||| ||| ||||||||| |
Sbjct  91   CCGGAGGGATTCTTGGAACGGTCGATGGGTTTGCCAAAGGGGTCGGGA-TATGGCCCAAT  149

Query  120  AATTACCAGAGCACCGGTCGTGTCTTCGAGGAGC-ACAATAAGACGCGTCCGGCCAACGA  178
            ||||| |||||||||||||  | |||||| || | |||||| |||| ||||||  ||| |
Sbjct  150  AATTATCAGAGCACCGGTC--G-CTTCGA-GAACAACAATATGACGAGTCCGGGAAACTA  205

Query  179  TGGCAATGATAACGGCGGTGCGGTGAAGCCTTGCGAGAACTCTGGCGGCCGCCGCCAGAA  238
             ||||||| ||| |||||||| |||||| | | ||||||||| |||||||||||||||||
Sbjct  206  CGGCAATGGTAATGGCGGTGCAGTGAAGGCATCCGAGAACTCCGGCGGCCGCCGCCAGAA  265

Query  239  AGACAGGGAGTAAAGGACTC-TGGAACGCACCCAGT  273
            |||||||||||||||||||| || | | ||||||||
Sbjct  266  AGACAGGGAGTAAAGGACTCCTG-ACCACACCCAGT  300



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 12516669501


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5