BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg926061
Length=924
Score E
Sequences producing significant alignments: (Bits) Value
AT1G67870.1 | Symbols: | glycine-rich protein | chr1:25449367-... 544 8e-154
> AT1G67870.1 | Symbols: | glycine-rich protein | chr1:25449367-25451012
REVERSE LENGTH=1135
Length=1135
Score = 544 bits (294), Expect = 8e-154
Identities = 639/797 (80%), Gaps = 58/797 (7%)
Strand=Plus/Plus
Query 1 AAGTATATATTTAAAGAAAAATGCTTGATAAGCTTACC--A--GA---G-GGT-TCGGGC 51
||||||| ||||| |||||||||||||||||||||||| | || | ||| || |||
Sbjct 50 AAGTATAAATTTACAGAAAAATGCTTGATAAGCTTACCAGAGGGATCGGAGGTCTCCGGC 109
Query 52 ACAGACACGGG-------A-G-AAGCCGCA-GCTTCGGGTTCGAGGAGCACAAGGAGTTT 101
| |||| ||| | | ||| |||| |||||||||||||||||||||||||||||
Sbjct 110 GCGGACATGGGCATTTCCAGGCAAG-CGCAGGCTTCGGGTTCGAGGAGCACAAGGAGTTT 168
Query 102 GT-GACTCATATGGAGTCAGAAGGAAGCTTCTTTGACCGTCAAGCCCGC-ATGA--GGCT 157
| || || | |||||||| |||| ||||| ||||||||||||||||| | | |
Sbjct 169 -TCGAGTCGTGTGGAGTCATCAGGAGGCTTCGTTGACCGTCAAGCCCGCTACAACCACCG 227
Query 158 TCCGGCCAACCATGGCCGTCCACCCATGGCTCACATGCCTGTCTGCGATGAAGAAGACTC 217
| ||| ||||||||||||||||||||| | || |||||| ||||||||||||||
Sbjct 228 TACGGGCAACCATGGCCGTCCACCCAT-G----CA----TGTCTGGGATGAAGAAGACTC 278
Query 218 AGACTCAGATGTGGAGGAGTTCTTCGAGAGAAGCCGGACCCACCACACTACTGCGTTGCC 277
||||||||| |||||||||||||| ||||| ||||||||||| |||||||||||||||||
Sbjct 279 AGACTCAGACGTGGAGGAGTTCTTTGAGAGCAGCCGGACCCAACACACTACTGCGTTGCC 338
Query 278 GCAACCACTTCATCTGAACTTCAGGCCTCCACCTCCAGTGACTCAGCCTCACCATAATGG 337
||||||||||||| |||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 339 GCAACCACTTCATATGAACTTCAGGCCTCCACCTCCAGTGACTCAGCCTCACCACAACGG 398
Query 338 GAAGATGGGTAA--T-GG-AATGC-TGGGACAACATGAAGATGCATTCCATGGAGGGCAC 392
|| ||||| || | || |||| | | || || | || || | | | | ||
Sbjct 399 AAAAATGGGAAAGATAGGTAATGGATTG--CAGCAGG--GA--CA--CGA-G-ATA-CAT 447
Query 393 GGGATGCAGCACCACGGTGGACATGGGATGCAACACCATGGCGGACACGGGATGCAACAC 452
|||||| ||||||| || ||||||||||| || ||||| | | |||||||||||| |||
Sbjct 448 GGGATGAAGCACCAGGGCGGACATGGGATCCAGCACCACGACATACACGGGATGCAGCAC 507
Query 453 CACAACATACATGGGATGCAGCACCAGGGCGA-GCATGGAATGCAACACCAAGGAGAGCA 511
|| | || |||||||||||||||||| | ||| || ||||| ||||| || | |||
Sbjct 508 CAGGGCGGGCACGGGATGCAGCACCAGGGC-ATGCACGGGATGCAGCACCAGGGGGGGCA 566
Query 512 CGGGTTGCAGCATCAAGGCGGGCACGGGATGCAGCACCAAGGGGA-GCACAGAATGAAGC 570
||| ||||||| || ||||||||||| ||||||||||| ||| | ||| | ||| |||
Sbjct 567 CGGAATGCAGCACCAGGGCGGGCACGGAATGCAGCACCA-GGGCATGCATGGGATGCAGC 625
Query 571 ACCAGGGTGGGCACGGAATGCAGCACCAAGGG-GGGCACGGAATGCAGCACCAGGTCGGG 629
||||||| |||||||||||| ||||||| ||| |||||||||||||||||||||| | |
Sbjct 626 ACCAGGGGGGGCACGGAATGGAGCACCA-GGGCGGGCACGGAATGCAGCACCAGGACATG 684
Query 630 CACGAGATGAAGCACCAGAGCGGGCACAGACTGCAGCACCAGGGCGGGCACGGAAGGCAG 689
|| | |||| |||||||| || ||||| || ||||||||||||||||||||| || ||||
Sbjct 685 CATGGGATGCAGCACCAGGGCAGGCACGGAATGCAGCACCAGGGCGGGCACGAAATGCAG 744
Query 690 CACCAGGGCGGGCACGAGATGAAGCACCAGGATGGGCACGGAATGCAGCATCAGGGCGGG 749
|| |||||| ||| | |||| ||||||||| |||||| |||| |||||||||||| |
Sbjct 745 CATCAGGGCATGCATGGGATGCAGCACCAGGGCGGGCACAGAATACAGCATCAGGGCATG 804
Query 750 CACGG-ACTGCAACACC 765
|| || | |||| ||||
Sbjct 805 CATGGGA-TGCAGCACC 820
Score = 448 bits (242), Expect = 6e-125
Identities = 397/471 (84%), Gaps = 14/471 (3%)
Strand=Plus/Plus
Query 461 ACATGGGATGCAGCACCAGGGCGA-GCATGGAATGCAACACCAAGGAGAGCACGGGTTGC 519
||||||||| |||||||| | | | || || ||||| ||||| || | ||||||| |||
Sbjct 468 ACATGGGATCCAGCACCACGAC-ATACACGGGATGCAGCACCAGGGCGGGCACGGGATGC 526
Query 520 AGCATCAAGGCGGGCACGGGATGCAGCACCAAGGGGAGCACAGAATGAAGCACCAGGGTG 579
|||| || ||| |||||||||||||||||| |||| |||| ||||| |||||||||| |
Sbjct 527 AGCACCAGGGCATGCACGGGATGCAGCACCAGGGGGGGCACGGAATGCAGCACCAGGGCG 586
Query 580 GGCACGGAATGCAGCACCAAGGG-GGGCACGGAATGCAGCACCAGGTCGGGCAC-GAGAT 637
|||||||||||||||||| |||| ||| || ||||||||||||| |||||| || ||
Sbjct 587 GGCACGGAATGCAGCACC-AGGGCATGCATGGGATGCAGCACCAGGGGGGGCACGGA-AT 644
Query 638 GAAGCACCAGAGCGGGCACAGACTGCAGCACCAGGGCGGGCACGGAAGGCAGCACCAGGG 697
| |||||||| |||||||| || |||||||||||| | ||| || | ||||||||||||
Sbjct 645 GGAGCACCAGGGCGGGCACGGAATGCAGCACCAGGACATGCATGGGATGCAGCACCAGGG 704
Query 698 CGGGCAC-GAGATGAAGCACCAGGATGGGCACGGAATGCAGCATCAGGGCGGGCA-CGGA 755
| ||||| || ||| ||||||||| ||||||| |||||||||||||||| ||| |||
Sbjct 705 CAGGCACGGA-ATGCAGCACCAGGGCGGGCACGAAATGCAGCATCAGGGCATGCATGGGA 763
Query 756 CTGCAACACCAGAGG-GGGCACGGACTACAACACCAGGGCGGGCACGGGATGCAGCACCA 814
|||| |||||| || |||||| || |||| || |||||| ||| |||||||||||||
Sbjct 764 -TGCAGCACCAG-GGCGGGCACAGAATACAGCATCAGGGCATGCATGGGATGCAGCACCC 821
Query 815 AGGCGGAGTAGTGGTGAAGGCTACTGAGAATTGGCGGGTGAGCAAAAGCAGCGGCCAGAA 874
|| ||||||||||| || |||||||||||||||||||| ||||||| || |||||||||
Sbjct 822 GGGTGGAGTAGTGGTAAACGCTACTGAGAATTGGCGGGTCAGCAAAATCACCGGCCAGAA 881
Query 875 ACTCGGGTGGGGGA-GTAAGGGACTCTAGACTCCACCTAAATACTATGCCG 924
|||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 882 ACTCGGGT-GGGGAGGTAAGGGACTCTAGACTCCACCTAAATACTATGCCG 931
Score = 56.5 bits (30), Expect = 4e-07
Identities = 32/33 (97%), Gaps = 0/33 (0%)
Strand=Plus/Plus
Query 786 CACCAGGGCGGGCACGGGATGCAGCACCAAGGC 818
||||||||||||||||||||||||||||| |||
Sbjct 505 CACCAGGGCGGGCACGGGATGCAGCACCAGGGC 537
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45160498153
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5