BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg926062
Length=1214
Score E
Sequences producing significant alignments: (Bits) Value
AT1G67880.1 | Symbols: | beta-1,4-N-acetylglucosaminyltransfer... 1849 0.0
AT2G13290.1 | Symbols: | beta-1,4-N-acetylglucosaminyltransfer... 97.1 3e-19
> AT1G67880.1 | Symbols: | beta-1,4-N-acetylglucosaminyltransferase
family protein | chr1:25453921-25455735 REVERSE LENGTH=1615
Length=1615
Score = 1849 bits (1001), Expect = 0.0
Identities = 1145/1216 (94%), Gaps = 4/1216 (0%)
Strand=Plus/Plus
Query 1 GAGTTCTTGTTCGAAGAAAGATGTGGTGGATGATGGGAGAAAACGGTGGTCACTACTGTT 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 263 GAGTTCTTGTTCGAAGAAAGATGTGGTGGATGATGGGAGAAAACGGTGGTCACTACTGTT 322
Query 61 CTAAAAAGTCTGATGATTTATGCGGAACTCAGGAATCAGATCGAGGCTTTGGTATTTCAA 120
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 323 CTAAAAAGTCCGATGATTTATGCGGAACTCAGGAATCAGATCGAGGCTTTGGTATTTCAA 382
Query 121 GACTCTGTTGTATCTTGCGTGGTGTTGATTTTAAATCGATTCTGTTTCTTTTAGTAATCG 180
||||||||||||||||||||||||| ||||| |||||| |||||||||| |||||||||
Sbjct 383 GACTCTGTTGTATCTTGCGTGGTGTGGATTTAAAATCGGTTCTGTTTCTGTTAGTAATCA 442
Query 181 TACCAATGTGTGTTCTTGGTGTATACATTAACGCTCTCAAGATTTCATATTTCTTGAGAC 240
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 443 TGCCAATGTGTGTTCTTGGTGTATACATTAACGCTCTCAAGATTTCATATTTCTTGAGAC 502
Query 241 CTTTATGGGAATCACCACCAAAACCATTCCATGAGATACCGCATTATCACCACGAGAACG 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 503 CTTTATGGGAATCACCACCAAAACCATTCCATGAGATACCGCATTATCACCACGAGAACG 562
Query 301 CTTCTATGGAATCTCTTTGTAAACTCCATGGCTGGGGAATACGTGAGTACCCTCGTCGTG 360
|||||||||||||||| ||||||||||| || ||| ||| |||||||||||||||||||
Sbjct 563 CTTCTATGGAATCTCTCTGTAAACTCCACGGTTGGAGAACCCGTGAGTACCCTCGTCGTG 622
Query 361 TCTACGACGCTGTTTTGTTCAGTACTGAAGTTGAACTTCTCACGATACGGTGGAAAGAAC 420
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 623 TCTACGACGCTGTTTTGTTCAGTACTGAAGTTGAACTCCTCACGATACGGTGGAAAGAAC 682
Query 421 TGTATCCATATGTTACTCAGTTTGTTCTGCTTGAGTCTAACTCGACTTTCACCGGATTAC 480
|||| ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 683 TGTACCCATATGTTACTCAGTTTGTTCTACTTGAATCTAACTCGACTTTCACCGGATTAC 742
Query 481 CTAAACCGCTTGTTTTCGCGGGGCATAGGGATGAGTTTAAGTTTATTGAGCCACGGTTGA 540
| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 743 CAAAACCGCTTGTTTTCGCGGGGCATAGGGATGAGTTTAAGTTTATCGAGCCACGGTTGA 802
Query 541 CTTACGGGTCGATAGGAGGAAGGTTTAAGAAAGGAGAGAAGAATCCTTTTTACGAAGAGG 600
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 803 CTTACGGGTCGATAGGAGGAAGGTTTAAGAAAGGTGAGAAGAATCCTTTTTACGAAGAGG 862
Query 601 CCTATCAGAGAATCGCATTGGATCAGCTTTTGAGAATTGCGGGTATTACCGATGATGATT 660
| ||||| |||||||||||||||||||| |||||||| || ||||| || |||||||| |
Sbjct 863 CTTATCAAAGAATCGCATTGGATCAGCTATTGAGAATAGCTGGTATCACTGATGATGACT 922
Query 661 TGCTT-ATTATGTCTGATGTTGATGAGATTCCAAGCAGACATACGATAAATCTTCTCCGT 719
|| || |||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 923 TG-TTGATTATGTCTGATGTTGATGAGATTCCGAGTAGACATACGATAAATCTTCTCCGT 981
Query 720 TGGTGCGATGACATACCGA-AAATCCTTCACCTTAGACTGAAGAATTACTTGTACTCGTT 778
||||||||||||||||| | |||| ||||| |||||||||||||||||||||||||| ||
Sbjct 982 TGGTGCGATGACATACC-ACAAATTCTTCATCTTAGACTGAAGAATTACTTGTACTCTTT 1040
Query 779 TGAGTTCCCGGTTGATGACAAGAGTTGGAGAGCATCAGTTCATAGGTACCAGACTGGTAA 838
||||||||| |||||||| ||||| ||||||||||| || ||||| |||||||| |||||
Sbjct 1041 TGAGTTCCCTGTTGATGATAAGAGCTGGAGAGCATCGGTGCATAGATACCAGACGGGTAA 1100
Query 839 AACGAGGTATGCGCATTATAGACAGTCTGATGTGATCTTGGCGGATTCAGGGTGGCATTG 898
||| ||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||
Sbjct 1101 AACAAGGTATGCGCATTATCGACAGTCTGATGTTATCTTGGCGGATTCAGGGTGGCATTG 1160
Query 899 CAGCTTCTGTTTCAGACGGATAAGCGAGTTTGTGTTCAAAATGAAAGCTTATAGTCACTA 958
||| |||||||| ||||| ||||||||||||||||| || ||||||||||||||||| ||
Sbjct 1161 CAGTTTCTGTTTTAGACGTATAAGCGAGTTTGTGTTTAAGATGAAAGCTTATAGTCATTA 1220
Query 959 CGATAGAGTGAGATTCGCGCATTACTTGAACCCGAAAAGGGTTCAAAGAGTTATATGCAG 1018
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1221 TGATCGAGTGAGATTCGCGCATTACTTGAACCCGAAAAGGGTTCAAAGAGTTATATGCAG 1280
Query 1019 CGGAGCGGATCTCTTCGACATGATTCCCGAGGAATACACGTTTAAAGACATCATCGGGAA 1078
|||| ||||| | ||||| ||||||||||||||||||||||||||||||||||| || ||
Sbjct 1281 CGGATCGGATTTGTTCGATATGATTCCCGAGGAATACACGTTTAAAGACATCATTGGTAA 1340
Query 1079 AATGGGTCCTATCCCGCATTCTTATTCCGCGGTTCATCTTCCGGCGTACCTACTGGAGAA 1138
|||||| || |||||||||||||| |||||||||||||||||||||||||| | |||||
Sbjct 1341 AATGGGACCGATCCCGCATTCTTACTCCGCGGTTCATCTTCCGGCGTACCTTTTAGAGAA 1400
Query 1139 TGCAGAGAGGTACAAGTTTCTTCTTCCGGGGAACTGCTTGAGAGATGAGGAATGAATTGG 1198
|| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1401 CGCGGAGAGGTACAAGTTTCTTCTTCCGGGGAACTGTTTGAGAGATGAGGAATGAATTGG 1460
Query 1199 CTATTGTAACTAATAT 1214
|||||||||||||||
Sbjct 1461 TTATTGTAACTAATAT 1476
> AT2G13290.1 | Symbols: | beta-1,4-N-acetylglucosaminyltransferase
family protein | chr2:5511562-5513265 FORWARD LENGTH=1492
Length=1492
Score = 97.1 bits (52), Expect = 3e-19
Identities = 75/85 (88%), Gaps = 6/85 (7%)
Strand=Plus/Plus
Query 886 CAGGGTGGCATTGCAGCTTCTGTTTCAGACGGA-T-AAGCGAGTTTGTGTTCAAAATGAA 943
||||||||||||||||||||||||||||||| | | || ||||||||| ||||| |||||
Sbjct 1066 CAGGGTGGCATTGCAGCTTCTGTTTCAGACG-ACTCAA-CGAGTTTGTTTTCAAGATGAA 1123
Query 944 AGCTTATAGTCACTAC-GATAGAGT 967
|| ||||||||| | | ||||||||
Sbjct 1124 AGGTTATAGTCA-TGCAGATAGAGT 1147
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59638247460
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5