BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg926065
Length=351
Score E
Sequences producing significant alignments: (Bits) Value
AT1G67910.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 429 8e-120
> AT1G67910.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures;
EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT1G24577.1);
Has 167 Blast hits to 167 proteins in 19 species: Archae -
0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 167; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:25471288-25472440
REVERSE LENGTH=672
Length=672
Score = 429 bits (232), Expect = 8e-120
Identities = 277/298 (93%), Gaps = 5/298 (2%)
Strand=Plus/Plus
Query 55 ATGGAGAAGGTGCAACAAATGACAAACGACAAAGGAATCATGAAGATTGAAATTCTTGGC 114
||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| | ||
Sbjct 151 ATGGAGAAGGTGCAACAAATGACAAACAACAAAGGAATCATGAAGGTTGAAATTCATAGC 210
Query 115 GATGGCAATTCTGCGGCGGAAGTGGGTTCCCGTGGGCTATCCCGTCAGACAAGCATGACC 174
|| ||||||||||| |||||||||||||||||||||||| ||||||||||||||||||
Sbjct 211 CATTTCAATTCTGCGGTGGAAGTGGGTTCCCGTGGGCTATCTCGTCAGACAAGCATGACC 270
Query 175 AAGACCAACTGCCTTTGCTCACCAACCACTCACCCTGGTTCTTTCCGGTGTAGGATTCAC 234
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 271 AAGACCAACTGCCTTTGCTCACCAACCACTCACCCTGGTTCTTTCCGGTGTAGGATTCAC 330
Query 235 CGGTCTCTTTCGTTGCAACGTACCAAGAGTATGGAAGCTGCATCTCTATTGGATTCTCCA 294
|| ||||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 331 CGTTCTCTTTCGTTGCAACGTACCAAGAGTATCGAGGCTGCATCTCTATTGGATTCTCCA 390
Query 295 CCCAAGCCAGCGGATTCCCCTAGTGCCGCGCTCTAAATAGATTTATG-ATGAATCCAT 351
|| ||||||||||||||||||||| |||| | | ||||||| ||| ||||||||||
Sbjct 391 CCAAAGCCAGCGGATTCCCCTAGTACCGC--T--ACATAGATTCATGCATGAATCCAT 444
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 16437553923
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5