BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg926066

Length=247
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G67920.1 | Symbols:  | unknown protein; BEST Arabidopsis tha...   409    7e-114


> AT1G67920.1 | Symbols:  | unknown protein; BEST Arabidopsis thaliana 
protein match is: unknown protein (TAIR:AT1G24600.1); 
Has 22 Blast hits to 22 proteins in 5 species: Archae - 0; 
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 22; Viruses 
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:25473544-25474140 
FORWARD LENGTH=597
Length=597

 Score =  409 bits (221),  Expect = 7e-114
 Identities = 236/243 (97%), Gaps = 2/243 (1%)
 Strand=Plus/Plus

Query  1    TTTGGTCTCGTGTTTGTGTAGAGATGGAGAACAAGACAGATAATGGAAACGAGGATGGTC  60
            ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct  165  TTTGGTCTCGTGTTTGTGTAGAGATGGAGAACAAGACCGATAATGGAAACGAGGATGGTC  224

Query  61   CAATAATACATAGCCAAGTTGAGAAGATAAAGAAAGAGTTTGAGAAGATAAGGA-AACCA  119
            ||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| 
Sbjct  225  CAATAATACATAGCCAAGTTGAGAAGATAAAGAAAGAGTTTGAGAAGATAA-GACAACCG  283

Query  120  TCGCTGCAACAACCGGAGATGAGGAGGGTACTTAGCGAGATCAACAGGCGTCAACGTTCA  179
            |||||||| |||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct  284  TCGCTGCAGCAACCGGAGATGAGGAGGGTTCTTAGCGAGATCAAAAGGCGTCAACGTTCA  343

Query  180  CGTTCTCCTCTTGGTTTAGGGGAGAGATCTATTTCCGTTGGGAATTGATCCATGTTTGAC  239
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  344  CGTTCTCCTCTTGGTTTAGGGGAGAGATCTATTTCCGTTGGGAATTGATCCATGTTTGAC  403

Query  240  TTT  242
            |||
Sbjct  404  TTT  406



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 11209708027


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5