BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg926073
Length=1163
Score E
Sequences producing significant alignments: (Bits) Value
AT1G68110.1 | Symbols: | ENTH/ANTH/VHS superfamily protein | c... 1677 0.0
> AT1G68110.1 | Symbols: | ENTH/ANTH/VHS superfamily protein |
chr1:25524718-25526150 FORWARD LENGTH=1433
Length=1433
Score = 1677 bits (908), Expect = 0.0
Identities = 1098/1186 (93%), Gaps = 28/1186 (2%)
Strand=Plus/Plus
Query 1 TAGGAGGGAGGCGGCT-TGACGATGAAGCTGTGGAAACGAGCTGCCGCCGCAATCAAAGA 59
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 162 TAGGAGGGAGGCGGCTCGGACGATGAAGCTGTGGAAACGAGCTGCCGCCGCAATCAAAGA 221
Query 60 CCGGAAAAGCTTACTTGCCGTTGGTTTCTCACGGCGAAACAGCTCTTACCGGAACGCGGA 119
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 222 CCGGAAAAGCTTACTAGCCGTTGGTTTCTCACGGCGAAACAGCTCTTACCGGAACGCAGA 281
Query 120 TCTCGAAGCAGCTATCATCAAAGCCACCTCCCACGACGATTCCTCCGTCGACTATTCAAA 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 282 TCTCGAAGCAGCTATCATCAAAGCCACCTCCCACGACGATTCCTCCGTCGACTATTCCAA 341
Query 180 CGCTCACCGTGTCTACAAATGGATCCGTTCTTCTCCTCTTAATCTCAAGACTCTCGTCTT 239
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 342 CGCTCACCGTGTCTACAAATGGATCCGTTCTTCTCCTCTTAATCTCAAGACTCTCGTCTA 401
Query 240 CGCAATCTCTTCTCGCGTTAACCACACGCGTAGCTGGATCGTTGCGCTTAAATCCTTAAT 299
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 402 CGCAATCTCTTCTCGCGTTAACCACACGCGTAGCTGGATCGTTGCTCTTAAATCCTTAAT 461
Query 300 GCTTCTTCATGGTGTTCTCTGTTGTAAAGTACCGTCCGTCGTTGGAGAAATTCGTCGTCT 359
||||||||||||||||||||||||||||||||| ||||| || ||||| ||||||||||
Sbjct 462 GCTTCTTCATGGTGTTCTCTGTTGTAAAGTACCTTCCGTTGTCGGAGAGTTTCGTCGTCT 521
Query 360 TCCTTTCGATCTTTCCGATTTCTCCGATGGTCATTCTTGTCTTAGCAAGACTTGGGGATT 419
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 522 TCCTTTCGATCTTTCAGATTTCTCCGATGGTCATTCTTGTCTTAGCAAGACTTGGGGATT 581
Query 420 CAACATCTTTGTTCGAACTTACTTTGCTTTTCTTCATCATTACTCTTCCTTCTTGTCCGA 479
|||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 582 CAACGTCTTTGTTCGAACTTACTTCGCTTTTCTTCATCATTACTCTTCCTTCTTGTCCGA 641
Query 480 TCAGATTCACCGCCTCCGCGGTAACAACAGAAGATCGTTGGAG-A-A-ATCTGATTCTGT 536
||||||||| || ||||| |||||||||||||||||||||||| | | ||||||||||||
Sbjct 642 TCAGATTCATCGTCTCCGTGGTAACAACAGAAGATCGTTGGAGAAGACATCTGATTCTGT 701
Query 537 GATCCAAGAGCTTGAACGGATTCAAAAACTCCAGTCGCTCTTAGATATGATTCTTCAGAT 596
||||||||||||||||||||||| ||||||||||| ||| |||||||||||||||||||
Sbjct 702 TATCCAAGAGCTTGAACGGATTCAGAAACTCCAGTCTCTCCTAGATATGATTCTTCAGAT 761
Query 597 TCGGCCTATAGCCGACAATATGAAGAAGACTTTGATCTTAGAAGCTATGGATTGTCTCGT 656
||| ||| | || ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 762 TCGACCTGTTGCTGACAACATGAAGAAGACTTTGATCTTAGAAGCTATGGATTGTCTCGT 821
Query 657 CATCGAAAGTATCAACATCTACGGTAGAATTTGCGGCGCGATTATGAAAATCCTTCCGTT 716
|||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct 822 CATCGAAAGTATCAACATCTACGGTAGAATTTGCGGCGCGGTTATGAAAGTCCTTCCGTT 881
Query 717 GGCTGGGAAAA-CAGAGGCTGCAACGGTTTTGAAAATCGTCCACAAGGCGACATCTCAGG 775
|||||| |||| ||||||||||||||||||||||||||||| ||||| | ||||||||||
Sbjct 882 GGCTGG-AAAATCAGAGGCTGCAACGGTTTTGAAAATCGTCAACAAGACCACATCTCAGG 940
Query 776 GAGAAGATCTCATCATCTATTTCGAATTCTGCAAAAGTTTTGGTGTCTCAAACGCACGAG 835
|||||||||||||| |||||||||||||||||||| |||| |||||||| ||||| ||||
Sbjct 941 GAGAAGATCTCATCGTCTATTTCGAATTCTGCAAAGGTTTCGGTGTCTCGAACGCTCGAG 1000
Query 836 AAATTCCTCAATTTGTTAGGATACCCGAGGAGGAAGTAGAAGCAATCGAGAAAATGATCA 895
|||| |||||||| ||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 1001 AAATCCCTCAATTCGTTAGGATACCGGAGGAGGAAGTTGAAGCAATCGAGAAAATGATCG 1060
Query 896 ATAGCGTCCAAGAGAAGCCGGAGCCAGGGAAAGAAGAAGAAGAAGTAGAGGATGAGAAAG 955
||| |||||||||||||||| ||| || ||| || |||||| || ||||||||||||||
Sbjct 1061 ATACCGTCCAAGAGAAGCCGAAGCTAGAGAAGGACGAAGAA-AA--AGAGGATGAGAAAG 1117
Query 956 CTATTGTGGTGTTGGAGCAACCGAAGAAGCTGCAGACGATCATCACAGACAAATGGGAGA 1015
|||| |||||||||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct 1118 CTATGGTGGTGTTGGAGCAGCCGAAGAAGCTGCAGACGATCATCACGGACAAATGGGAGA 1177
Query 1016 TTTTCGAAGACGACTATCGTTGTTT-G---GACA-GA-A---G--AGA----CGA---CG 1057
||||||||||||| ||||| ||||| | || | || | | ||| ||| ||
Sbjct 1178 TTTTCGAAGACGATTATCGGTGTTTCGATAGAAAAGACAAATGGGAGATTTTCGAAGACG 1237
Query 1058 AATATCATCAAAATCATCTGCCTCTTATAGTAACGAACCAACCAGTTTACATCACTTACA 1117
||||||||||||||||||||||||||||| || |||||||||||||||||||||||| |
Sbjct 1238 AATATCATCAAAATCATCTGCCTCTTATAACAATGAACCAACCAGTTTACATCACTTATA 1297
Query 1118 CAATGCCAGATTTGATTACCTTCTAGTGA-CATTACAACAATCTGG 1162
||||||||||||||||||| |||||||| | ||||||||||||||
Sbjct 1298 CAATGCCAGATTTGATTACATTCTAGTGGTCGTTACAACAATCTGG 1343
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57078019665
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5