BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg926076
Length=1210
Score E
Sequences producing significant alignments: (Bits) Value
AT1G68080.1 | Symbols: | 2-oxoglutarate (2OG) and Fe(II)-depen... 1784 0.0
> AT1G68080.1 | Symbols: | 2-oxoglutarate (2OG) and Fe(II)-dependent
oxygenase superfamily protein | chr1:25517411-25519440
FORWARD LENGTH=1489
Length=1489
Score = 1784 bits (966), Expect = 0.0
Identities = 1128/1208 (93%), Gaps = 4/1208 (0%)
Strand=Plus/Plus
Query 3 TACACGAACCGGAGAGATATGTCGGAGATAGAGCACCCTCGGCTTATTCTACACAATTTC 62
||||| ||||||||||| |||||||||| ||||||||||||||| |||||||||||||||
Sbjct 102 TACACAAACCGGAGAGACATGTCGGAGAAAGAGCACCCTCGGCTAATTCTACACAATTTC 161
Query 63 CTGTCGCCGGCAGAGTGCAAAGAGCTTGAG-TTCATACACAAGAGTTGCAGTACAATTGG 121
|||||||||||||| ||||| || |||||| || |||||||||||| |||||||||||||
Sbjct 162 CTGTCGCCGGCAGAATGCAAGGAACTTGAGCTT-ATACACAAGAGTAGCAGTACAATTGG 220
Query 122 TTACAGACCAAATGTCTTCTCCACTACTCTCTCTCACCTCATTGCCACTAATTCTCCTCA 181
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 221 GTACAGACCAAATGTCTTCTCCACTACTCTCTCTCACCTCATTGCCACTAATTCTCCTCA 280
Query 182 TCTCATCATCCCTTTCGTGTCCATTAGAGAGAGGTTGAAAGAGAAGATAGAGGAAACATT 241
|||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 281 CCTCATCATCCCTTTTGTCTCCATTAGAGAGAGGTTGAAAGAGAAGATAGAGGAAACATT 340
Query 242 TGGGTGTGAGTTTGAGCTTTTTATTGAATTCACAGGTTTGATTAGTTGGTGTAGAGGAGC 301
||||||||||| ||||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct 341 TGGGTGTGAGTATGAGCTTTTTATTGAATTCACAGGTTTGATTAGTTGGTGCAAAGGAGC 400
Query 302 TAGCATTGGGTGGCATAGTGATGATAACAGATCATATTTGAAACAAAGGGATTTCGCGGC 361
||||||||| ||||||||||||||||||||||||||| | |||||||| ||||| |||||
Sbjct 401 TAGCATTGGTTGGCATAGTGATGATAACAGATCATATCTAAAACAAAGAGATTTTGCGGC 460
Query 362 AGTTTGTTACTTGAATAGTTACGGGAAAGATTTCAAAGGCGGGCTTTTTCGTTTTCAGAG 421
||||||||||||||||||||||| ||||||||||| |||||| |||||||||||||||||
Sbjct 461 AGTTTGTTACTTGAATAGTTACGAGAAAGATTTCATAGGCGGTCTTTTTCGTTTTCAGAG 520
Query 422 TGGAGAACCAGCAACCGTTGCTCCATCGGCTGGTGATGTTATCATGTACACAGCTGATGA 481
||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 521 TGGTGAACCAGTAACCGTTGCTCCATCGGCTGGTGATGTTATCATGTACACAGCTGATGA 580
Query 482 CCAGAACATTCATTCGGTTGATGAGGTAACAGATGGAGAAAGATTGACTCTTGCACTCTG 541
|| ||| ||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 581 CCGGAATATTCACTCAGTTGATGAGGTAACAGATGGAGAAAGATTGACTCTTGCACTCTG 640
Query 542 GTTTAGCCGGGACTCATCCCATGACGAAGATGCCAAGCTTCTTTCCCGTCTTTCCCAATG 601
|||||||||||||||||| |||||||||||| ||||||||||||| |||||||| |||||
Sbjct 641 GTTTAGCCGGGACTCATCACATGACGAAGATTCCAAGCTTCTTTCTCGTCTTTCACAATG 700
Query 602 CACATCACATGGAGTTTGCCTCCCTTTGCCTGCATCTACTAACATGTACTGGTTCTGTCC 661
|||||||||| ||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 701 TACATCACATGAAGTGTGCCTCCCTTTGCCTGCATCCACTAACATGTACTGGTTCTGTCC 760
Query 662 TCATCAAGATGTTTCTAATCAAAACATAGGTTTTGATATTTGCGTTGCGAGGTTGCATCT 721
||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 761 TCATCAAGATGGTTCTAATCAAAACATAGGTTTTGATGTTTGCGTTGCGAGGTTGCATCT 820
Query 722 TCTTGGTTTCGACGTTCATAGCTTACAAGGCGAAGATCATTCTATGGATGGCTCAGAACA 781
||||||||| || || |||||||||||||||||||||||||||| ||||| ||| |||||
Sbjct 821 TCTTGGTTTTGATGTACATAGCTTACAAGGCGAAGATCATTCTACGGATGCCTCTGAACA 880
Query 782 ACTCATGGGGCCACTACAATTAGCTAAAGGAAGAGAGTTACTCATCCAAAAATTTGCCAA 841
||| ||||| ||||||||||||||||||||| || ||||||||| || ||||||||||||
Sbjct 881 ACTTATGGGACCACTACAATTAGCTAAAGGAGGAAAGTTACTCACCCGAAAATTTGCCAA 940
Query 842 CATTCTTCATGCTCTTCAGGTTGTTCAGTTCTACCATTGGAAAGCTTCTGAACTCAAAAC 901
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 941 CATTCTTCATGCTCTTCAGGTTGTTCAGTTCTACCATTGGAAAGCTTCTGAACTCGTAAC 1000
Query 902 TTCTAATGTCGAAAATGACACGTTAGAAGAGGTGAAAGCTATGTCCCACTCTCAGTTGGA 961
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1001 TTCTAATGTCGAAAATGACACATTAGAAGAGGTGAAAGCTATGTCCCACTCTCAGTTGGA 1060
Query 962 AACTATCTATACCCTGAAATCAGTTTTCCTGCCAGATGAGAACCTCGTAACTACAATTTT 1021
||||||| || ||||||||||||||||||||| |||||||||||||||| | |||| |||
Sbjct 1061 AACTATCAATGCCCTGAAATCAGTTTTCCTGCTAGATGAGAACCTCGTAGCCACAACTTT 1120
Query 1022 TGGATATTCGTGCTCTGATGAGGATCGAAAGGATTCACTTGACTTGACGGCTATATCTC- 1080
||||||||||||||||| ||||||||||||||||||||| |||||||||| |||| |||
Sbjct 1121 TGGATATTCGTGCTCTGGTGAGGATCGAAAGGATTCACTCGACTTGACGGGTATAGCTCT 1180
Query 1081 CTGTGATTCCCTCTTGGGAAGAGTATACCAGTAAGTTACTCAAGGAACTATTATCTTCCT 1140
| | | || |||||||||||||||||| | |||||||||||||||| |||||||| ||||
Sbjct 1181 C-GCGGTTACCTCTTGGGAAGAGTATAGCTGTAAGTTACTCAAGGAGCTATTATCATCCT 1239
Query 1141 TGCCTCAATGGAAAACTTATCAAACTATACACAAAGTCGAATCTGATTAGAAATTTATCC 1200
||||||||||||||||||||||||||||||||||||| |||||||||||||||| || |
Sbjct 1240 TGCCTCAATGGAAAACTTATCAAACTATACACAAAGTGGAATCTGATTAGAAATGAATTC 1299
Query 1201 CGAGTTAC 1208
|||||||
Sbjct 1300 TGAGTTAC 1307
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59437445280
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5