BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg926090
Length=831
Score E
Sequences producing significant alignments: (Bits) Value
AT1G67940.1 | Symbols: ATNAP3, AtSTAR1, NAP3 | non-intrinsic AB... 1376 0.0
> AT1G67940.1 | Symbols: ATNAP3, AtSTAR1, NAP3 | non-intrinsic
ABC protein 3 | chr1:25477670-25478803 FORWARD LENGTH=1063
Length=1063
Score = 1376 bits (745), Expect = 0.0
Identities = 799/825 (97%), Gaps = 3/825 (0%)
Strand=Plus/Plus
Query 4 TTGAAAACTTTAAAGCCATGCCGTCACTTTGGTCTAATGAATCCGATGG---ATTACGAG 60
|||||||||||||||||||||| |||||||||||||| ||||||||||| ||||||||
Sbjct 119 TTGAAAACTTTAAAGCCATGCCATCACTTTGGTCTAACGAATCCGATGGATCATTACGAG 178
Query 61 AGCATCTTGTGGACGTTGTTGTGTCTGGTTCAGAACCAAAGATTCGGGTACATGATCTGA 120
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 179 AGCATCTTGTGGATGTTGTTGTGTCTGGTTCAGAACCAAAGATTCGGGTACATGATCTGA 238
Query 121 CCCGAGTCGCCGATGATGGATCTCGGATCTTGAAAGGAGTTACGGTGGATTTACCAAAAG 180
|||||||||||||||||||||||||||||||||||||||||||| | ||| |||||||||
Sbjct 239 CCCGAGTCGCCGATGATGGATCTCGGATCTTGAAAGGAGTTACGATAGATATACCAAAAG 298
Query 181 GTATGATCGTTGGCGTGATTGGACCAAGTGGAAGTGGAAAGTCAACGTTTCTGAGATCTC 240
||||||||||||| ||||||||||| |||||||||||||||||||||||| |||||||||
Sbjct 299 GTATGATCGTTGGTGTGATTGGACCTAGTGGAAGTGGAAAGTCAACGTTTTTGAGATCTC 358
Query 241 TGAATCGTCTTTGGGAACCGCCGGAGTCAACTGTGTTCTTGGACGGTGAAGATATAACGA 300
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 359 TGAATCGTCTTTGGGAACCACCGGAGTCAACTGTGTTCTTGGACGGTGAAGATATAACCA 418
Query 301 AGGTTGATGTTATTGCTCTTCGTCGTAGAGTTGGAATGCTTTTTCAGCTTCCTGTTCTTT 360
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 419 ACGTTGATGTTATTGCTCTTCGTCGTAGAGTTGGAATGCTTTTTCAGCTTCCTGTTCTTT 478
Query 361 TTCAAGGGACTGTTGCGGATAATGTGAGATATGGTCCAAATTTGAGAGGGGAGAAACTAA 420
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 479 TTCAAGGGACTGTTGCGGATAATGTGAGATATGGTCCGAATTTGAGAGGGGAGAAACTAA 538
Query 421 GTGACGAAGAGGTTTATAAGCTGCTAAGTCTTGCAGACCTTGATGCTTCCTTTGCTAAGA 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 539 GTGACGAAGAGGTTTATAAGCTGCTAAGTCTTGCAGACCTTGATGCTTCCTTTGCTAAGA 598
Query 481 AGACTGGTGCAGAGTTATCTGTGGGTCAAGCTCAACGAGTAGCACTTGCAAGGACTCTAG 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 599 AGACTGGTGCAGAGTTATCTGTGGGTCAAGCTCAACGAGTAGCACTTGCAAGGACTCTAG 658
Query 541 CTAACGAGCCTGAGGTGTTGCTGCTGGATGAACCAACAAGTGCTCTTGATCCGATATCGA 600
| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 659 CCAACGAGCCTGAGGTGTTGCTGCTCGATGAACCAACAAGTGCTCTTGATCCGATATCGA 718
Query 601 CAGAGAACATTGAGGATGTTATAGTGAAACTGAAGAAGCAGAGAGGTATTACGACTGTGA 660
|||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 719 CAGAGAACATTGAGGATGTTATAGTGAAACTGAAGAAGCAGAGAGGGATTACTACTGTGA 778
Query 661 TTGTTTCTCACAGTATCAAGCAGATTCAGAAAGTTGCTGATATTGTTTGTCTTATTGTCG 720
||||||||||||||||||||||||||||||||||||||||||| ||||| ||| ||||||
Sbjct 779 TTGTTTCTCACAGTATCAAGCAGATTCAGAAAGTTGCTGATATCGTTTGCCTTGTTGTCG 838
Query 721 ACGGAGAGATTGTTGAAGTTCTGAAACCGAGTGAGCTTTCGCACGCTACGCATCCAATGG 780
|||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 839 ACGGAGAGATTGTTGAAGTTCTTAAACCAAGTGAGCTTTCGCACGCTACGCATCCAATGG 898
Query 781 CACAGAGGTTTCTTCAACTCAGTTCTTGAGACCAATTTCTCATTG 825
|||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 899 CACAGAGGTTTCTTCAACTCAGTTCTTGAGACCATTTTCTCATTG 943
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40488722482
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5