BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg926110
Length=799
Score E
Sequences producing significant alignments: (Bits) Value
AT1G68340.1 | Symbols: | Protein of unknown function (DUF1639)... 848 0.0
> AT1G68340.1 | Symbols: | Protein of unknown function (DUF1639)
| chr1:25614197-25615403 REVERSE LENGTH=1052
Length=1052
Score = 848 bits (459), Expect = 0.0
Identities = 708/817 (87%), Gaps = 61/817 (7%)
Strand=Plus/Plus
Query 4 TAGGTTTTTGA-TTTTCAATGGCGACGACGACGGGACATGAGAGATCAAAGACTCTTATC 62
||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 51 TAGGTTTTTGATTTTTCAATGGCGACGACGACGGGACACGAGAGATCAAAGACTCTTATC 110
Query 63 AGTTTCTCGTTACCGAAGTTATGGGGGACTCAACGACATCTAAGGTGTGTGAAGGGTGAT 122
| |||||||||||||||||| |||||||||||||||| ||| |||||| ||||||||||
Sbjct 111 AATTTCTCGTTACCGAAGTTGTGGGGGACTCAACGACTTCTGCGGTGTGGGAAGGGTGAT 170
Query 123 GATTCTGACGGT---GGTGGT---GGTTCTAGCTCCGGCGGTGATCAACGAATCCGTCGC 176
|||||||||||| |||||| ||||||||||||||||||||||||||||||||||||
Sbjct 171 GATTCTGACGGTGACGGTGGTGAAGGTTCTAGCTCCGGCGGTGATCAACGAATCCGTCGC 230
Query 177 CGATCTTCGAATTTCGAATTCGATTATCAGAATCGACGATTGATGGTTGAATCATCGGAG 236
|| |||||||||||||||| |||| |||||||||||||||| | ||||||||||||||||
Sbjct 231 CGTTCTTCGAATTTCGAATCCGATCATCAGAATCGACGATTAAAGGTTGAATCATCGGAG 290
Query 237 AAAGAAGGAATCGAAGAGTTTAGAGAGAAGATTATGTTAGATCTTAGAAACGTTGCTGAT 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 291 AAAGAAGGAATCGAAGAGTTTAGAGAGAAGATTATGTTAGATCTTAGAAACGTTGCTGAT 350
Query 297 AAGATGACGGAATCGATAATTAGGGAACAAGT--T-CTCGGCGaagaagaagat-a-aag 351
||||||| |||||| ||| ||||| ||||||| | ||||||||||||||||| | |||
Sbjct 351 AAGATGAAGGAATCTATATTTAGGCAACAAGTACTTCTCGGCGAAGAAGAAGAAGATAAG 410
Query 352 -agatggagatagagagggaggattctccaccggagagagagGTTTCACCGCCGTCACCG 410
|||| ||||| |||||||| |||||||| ||||| || | | || |
Sbjct 411 GAGATTGAGATTGAGAGGGATGATTCTCCGCCGGA-AG--------C---G-----AC-G 452
Query 411 CCGGAAGCGACGGGAGCAACGGTGGAGGTACGGCCGTGGAATTTGAGAAAGAGAAGAGCA 470
||| ||| || | | |||||||||||||||||||||||||||||||||||||||
Sbjct 453 --GGA-GCGGCG--A-C---GGTGGAGGTACGGCCGTGGAATTTGAGAAAGAGAAGAGCT 503
Query 471 GCTTGTAAAGCTCCGATTTC---AGGAATCGATTCGGGAT-T-AGTGATTGAGGAGAATA 525
|||||||||||| ||||||| |||||| |||||| | | |||| | |||| | |
Sbjct 504 GCTTGTAAAGCTTCGATTTCTTTAGGAATTGATTCGAAAAATCAGTG-TA-AGGA-A-TC 559
Query 526 AACGAGTGAATTCGTCGATTTTAGGAAACGAATTGGGGAAAGATCGGA-GTAGATTGT-G 583
| || ||||| ||||||| |||||||||||||||||||||||| || | ||||||| |
Sbjct 560 AGTGA-TGAATCCGTCGATGTTAGGAAACGAATTGGGGAAAGATAGGTCG-AGATTGTTG 617
Query 584 CTATACGTTGTCAAAGAAGGAGATTGAAGAAGATTATATGAAGATGAT-GGGACAAAAAC 642
||||||||||| |||||||||||||||||||||||||||| |||||| ||| |||| |
Sbjct 618 -TATACGTTGTCGAAGAAGGAGATTGAAGAAGATTATATGATGATGATAGGGTTAAAA-C 675
Query 643 CACCGCGTAGACCGAAGAAACGATCAAGAAAC-GTTCAGAAACAGATCGATTTGTTGAAT 701
|||||||||| || |||||||||||||||| | ||||| |||||||||||||||||||||
Sbjct 676 CACCGCGTAGGCCTAAGAAACGATCAAGAA-CTGTTCAAAAACAGATCGATTTGTTGAAT 734
Query 702 TTTGGTTCTTATATAACTGAAATCACTGAAGATCTCTACAATGTTCCAGACCAAGCTGAG 761
|||| |||||||||||||||||||||||||||||| || |||||||| ||||||||||||
Sbjct 735 TTTGCTTCTTATATAACTGAAATCACTGAAGATCTTTATAATGTTCCTGACCAAGCTGAG 794
Query 762 AAGGGAAAGAG---ATGATGATAATGATGGATTGGAG 795
||| ||||||| |||||||||||||||||||||||
Sbjct 795 AAGAGAAAGAGTTGATGATGATAATGATGGATTGGAG 831
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38881229778
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5