BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg926111
Length=1166
Score E
Sequences producing significant alignments: (Bits) Value
AT3G01345.1 | Symbols: | Expressed protein | chr3:129138-13074... 749 0.0
AT5G28919.1 | Symbols: | FUNCTIONS IN: molecular_function unkn... 342 4e-93
AT5G35760.1 | Symbols: | Beta-galactosidase related protein | ... 172 5e-42
AT2G06845.1 | Symbols: | Beta-galactosidase related protein | ... 156 5e-37
AT1G47770.1 | Symbols: | Beta-galactosidase related protein | ... 108 2e-22
> AT3G01345.1 | Symbols: | Expressed protein | chr3:129138-130749
FORWARD LENGTH=1612
Length=1612
Score = 749 bits (405), Expect = 0.0
Identities = 574/654 (88%), Gaps = 17/654 (3%)
Strand=Plus/Plus
Query 1 GTAATGAACGCTTTCTTGTGATGGTGATGATGGATTTAGCTTGGATTAGTAGTTCTCTTT 60
|||||| |||||||| |||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 756 GTAATGGACGCTTTCCTGTGATGGTGATGATGGATTTAGCTTGGATTAGTAGCTCTCTCT 815
Query 61 CCCAAAACCTGGTCGATAGTTTATCTCGTTTGGTCCGTTTGCTTCA-TCGTTTGAGTCTG 119
| |||||||| || |||||| ||||||||||||||||||| ||||| | ||||||||||
Sbjct 816 CACAAAACCTAGTTGATAGTCTATCTCGTTTGGTCCGTTTTCTTCAGT-GTTTGAGTCTA 874
Query 120 GTCTTGATTCGTTTGGAGTTAATTTCTCTTTGGAAGTGTCCTAGAGTGTTGCTGCCCGTG 179
||||||| |||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 875 GTCTTGAATCGTTTGGAGCTATTTTCTCTTTGGAAGTGTCCTAGAGTGTTGCTGCCCACA 934
Query 180 CCAAGTATTATTAATTTCCTATCAAGTTCCCTCCCTTTAGCACCCTCTAACTCTGTCTTG 239
|||||||| ||||||| ||||| |||||||||| |||||||||||||| |||||| |||
Sbjct 935 CCAAGTATCGTTAATTTACTATCGAGTTCCCTCCTTTTAGCACCCTCTACCTCTGT-TTG 993
Query 240 G-CTGGTAATGGACGCCACGCTAACAGAGTAATGGTTTGTTTGGGCTGGCT-TGATAGTT 297
| ||||||||||||||| |||| |||| || |||||||||| || ||| || |||||
Sbjct 994 GGCTGGTAATGGACGCCTTGCTATCAGAATAGTGGTTTGTTTAGG-TGGGAATGGTAGTT 1052
Query 298 ACCTTTGTCGAGATCAGATGCTAAGTTTACTTTGGACTCTATACAAGACTCTCTT-ACCC 356
||| |||||||||| ||||| ||||||| |||||||| |||| | |||||| ||| ||||
Sbjct 1053 ACCATTGTCGAGATAAGATGTTAAGTTTTCTTTGGACCCTATCCGAGACTC-CTTTACCC 1111
Query 357 AACCATAGGCAATTGGCCTTTAGAGTTAAGAAGACCGGCATTATGACCCTGTCTCTACGG 416
| |||||||||| |||||||||||||||||| || ||||||||||||||||||||||| |
Sbjct 1112 ACCCATAGGCAAATGGCCTTTAGAGTTAAGAGGATCGGCATTATGACCCTGTCTCTACCG 1171
Query 417 AGTAGGTGTTACCGAAGCTTTTTCAACTCTCTACCTACCCATTCACCAATTATCGAGTTC 476
|||||||||||||||||| || ||||||| || || ||| |||||| |||||| | ||
Sbjct 1172 AGTAGGTGTTACCGAAGCCTTGAAAACTCTCAACTTATCCACTCACCATTTATCGCGCTC 1231
Query 477 AGTCATGT---GTTAATCTATTGCTTGGATAATTTGCAATCTTCTGGT-AGGTTGGAAAA 532
| |||||| ||||||||||||||||||||||||||||||| || | | |||| ||||
Sbjct 1232 ATTCATGTCATGTTAATCTATTGCTTGGATAATTTGCAATCT-CTTGACATGTTGAAAAA 1290
Query 533 GTACGGCATTATGACCATGTCTTCAAGAGGTGGTTACCGTCTCTTTT-TCAACCTCGTTA 591
|||||||||||||||||||||||||||| ||||||||||||| |||| ||||||||||||
Sbjct 1291 GTACGGCATTATGACCATGTCTTCAAGAAGTGGTTACCGTCT-TTTTCTCAACCTCGTTA 1349
Query 592 ACCCGTCAGCCTCCTCCGCGGAGCACCT-TTCCAAAAGCTCGGATGCATTGTTT 644
|||||||||||||||| |||||||| | ||| |||||||||||||||||||||
Sbjct 1350 ACCCGTCAGCCTCCTCAACGGAGCACTTCTTC-AAAAGCTCGGATGCATTGTTT 1402
> AT5G28919.1 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
cellular_component unknown; BEST Arabidopsis thaliana protein
match is: Expressed protein (TAIR:AT3G01345.1); Has 30201
Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria
- 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037;
Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
| chr5:10940033-10941771 FORWARD LENGTH=1739
Length=1739
Score = 342 bits (185), Expect = 4e-93
Identities = 281/327 (86%), Gaps = 8/327 (2%)
Strand=Plus/Plus
Query 322 GTTTACTTTGGACTCTATACAAGACT-CTCTTACCCAACCATAGGCAATTGGC-CTTTAG 379
|||| |||||||| || | | ||||| | |||||||||||||| | ||| || |||||
Sbjct 1225 GTTTCCTTTGGACCCTTTCCGAGACTAGT-TTACCCAACCATAGTC-ATTTGCTTTTTAG 1282
Query 380 AGTTAAGAAG-ACCGGCATTATGACCCTGTCTCTACGGAGTAGGTGTTACCGAAGCTTTT 438
||||||| || ||||||||||||||||| | ||||||||||||||||||||||||| | |
Sbjct 1283 AGTTAAG-AGTACCGGCATTATGACCCTATTTCTACGGAGTAGGTGTTACCGAAGCCTCT 1341
Query 439 TCAACTCTCTACCTACCCATTCACCAATTATCGAGTTCAGTCATGTGTTAATCTATTGCT 498
|||||||||| |||||||| ||||||||||| || |||||||||| ||||||| |||||
Sbjct 1342 ACAACTCTCTATCTACCCATACACCAATTATCAAGGTCAGTCATGTATTAATCTTTTGCT 1401
Query 499 TGGATAATTTGCAATCTTCTGGTAGGTTGGAAAAGTACGGCATTATGACCATGTCTTCAA 558
|||||||||||||| |||||| | | ||||||||||||||||||||||||||||||| |
Sbjct 1402 TGGATAATTTGCAACCTTCTGTTTGTTTGGAAAAGTACGGCATTATGACCATGTCTTTTA 1461
Query 559 GAGGTGGTTACCGTCTCTTTTTCAACCTCGTTAACCCGTCAGCCTCCTCCGCGGAGCACC 618
||| |||||||||| || ||||||||||| ||||| || ||||||||| |||||||
Sbjct 1462 GAGTTGGTTACCGTTTCCTTTTCAACCTCACCAACCCAACATCCTCCTCCGTGGAGCACA 1521
Query 619 TT-TCCAAAAGCTCGGATGCATTGTTT 644
| || |||||||||||||||||||||
Sbjct 1522 TGATC-AAAAGCTCGGATGCATTGTTT 1547
> AT5G35760.1 | Symbols: | Beta-galactosidase related protein
| chr5:13934108-13934782 FORWARD LENGTH=534
Length=534
Score = 172 bits (93), Expect = 5e-42
Identities = 163/196 (83%), Gaps = 7/196 (4%)
Strand=Plus/Plus
Query 898 CCGTGGAGCA-TTTTCTCAAAAGCTCGTTTGCGTTATTCGCGCGAGCCGTATATGACCAT 956
|||||||||| ||| ||||| |||| | ||| || || || |||||| ||||||||
Sbjct 197 CCGTGGAGCACCTTT-TCAAAGGCTCATATGCATTGTTTGCAATAGCCGTTTATGACCA- 254
Query 957 C-CGTTGGTCGAGGATTTCGCGAAGCCCGTCTTCATGGTCGAATCCGCTATGGCCTCAAA 1015
| |||||||||||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct 255 CACGTTGGTCGAGGATTTCGCGAAGCCCGTCTTCATGGTCGAATCCGCCAAAGCCTCAAC 314
Query 1016 AGATTCTTCAAACTTTGCAAACCTTTTTAAGA-TGAGCATCAT-TTTGGAAAACTCATGG 1073
||||| ||||||| ||| |||| ||||||| | ||| || | | |||| ||||||||||
Sbjct 315 AGATTTTTCAAACCTTGTAAACTTTTTTAAAAGTGAACACC-TCTTTGCAAAACTCATGA 373
Query 1074 AGCCTTTATCTTTATT 1089
||||| |||||| |||
Sbjct 374 AGCCTCTATCTTCATT 389
Score = 124 bits (67), Expect = 1e-27
Identities = 77/82 (94%), Gaps = 0/82 (0%)
Strand=Plus/Plus
Query 658 CCAAAAGGGTGAAGAAGAACGGCATTATGATCCCGTCTCTACGGAGCGGTGGTTACCGAA 717
||||||| ||||||||||||| |||||||||||| |||| ||||||||||||||||||||
Sbjct 5 CCAAAAGAGTGAAGAAGAACGCCATTATGATCCCATCTCCACGGAGCGGTGGTTACCGAA 64
Query 718 GCTTCTTCAACTCTCTATCTCC 739
||||||||||||||||| ||||
Sbjct 65 GCTTCTTCAACTCTCTACCTCC 86
> AT2G06845.1 | Symbols: | Beta-galactosidase related protein
| chr2:2754666-2756008 FORWARD LENGTH=948
Length=948
Score = 156 bits (84), Expect = 5e-37
Identities = 92/96 (96%), Gaps = 0/96 (0%)
Strand=Plus/Plus
Query 549 ATGTCTTCAAGAGGTGGTTACCGTCTCTTTTTCAACCTCGTTAACCCGTCAGCCTCCTCC 608
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1 ATGTCTTCAAGAGGTGGTTACCGTCTCTTTCTCAACCTCGTTAACCCGTCAGCCTCCTCC 60
Query 609 GCGGAGCACCTTTCCAAAAGCTCGGATGCATTGTTT 644
| ||||||||||| ||||||||| ||||||||||||
Sbjct 61 GTGGAGCACCTTTTCAAAAGCTCAGATGCATTGTTT 96
> AT1G47770.1 | Symbols: | Beta-galactosidase related protein
| chr1:17590266-17591261 FORWARD LENGTH=618
Length=618
Score = 108 bits (58), Expect = 2e-22
Identities = 90/105 (86%), Gaps = 4/105 (4%)
Strand=Plus/Plus
Query 941 AGCCGTATATGACCATC-CGTTGGTCGAGGATTTCGCGAAGCCCGTCTTCATGGTCGAAT 999
|||||| |||||||| | ||||||||||||||||||||||||||||| |||||||||||
Sbjct 513 AGCCGTCTATGACCA-CACGTTGGTCGAGGATTTCGCGAAGCCCGTCAACATGGTCGAAT 571
Query 1000 CCG-CTATGGCCTCAAAAGATTCTTCAAACTTTGCAAACCTTTTT 1043
||| | | ||| |||| ||||| ||||||| ||| ||| |||||
Sbjct 572 CCGTCAA-GGCTTCAACAGATTTTTCAAACCTTGTGAACTTTTTT 615
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57228621300
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5