BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg926113

Length=776
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G68360.1 | Symbols:  | C2H2 and C2HC zinc fingers superfamil...  1197    0.0  
  AT1G67030.1 | Symbols: ZFP6 | zinc finger protein 6 | chr1:2501...   152    5e-36


> AT1G68360.1 | Symbols:  | C2H2 and C2HC zinc fingers superfamily 
protein | chr1:25621678-25622412 REVERSE LENGTH=735
Length=735

 Score = 1197 bits (648),  Expect = 0.0
 Identities = 706/735 (96%), Gaps = 0/735 (0%)
 Strand=Plus/Plus

Query  21   ATGGAGGAGCTGGATTTTGGTTCAAAAACAACTACTTCTCGTCTAAAGTTATTTGGATTT  80
            |||||||||||||||||| ||||||||||||| ||||||||||||||| |||||||||||
Sbjct  1    ATGGAGGAGCTGGATTTTAGTTCAAAAACAACAACTTCTCGTCTAAAGCTATTTGGATTT  60

Query  81   AGTGTTGATGGAGAAGAAGATTTCTCCGATCAATCAGTCAAAACTAGCCAATCTTCTGTA  140
            |||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct  61   AGTGTTGATGGAGAAGAAGATTTCTCCGATCAATCAGTCAAAACTAACCTATCTTCTGTA  120

Query  141  TCACCTGAACGTGGCGAGTTTCCGGCGGGATCTTCCGGAAGAAGTGGCGGTGGTGTACGA  200
            ||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct  121  TCACCGGAACGTGGCGAGTTTCCGGCAGGATCTTCCGGAAGAAGTGGCGGTGGTGTACGA  180

Query  201  AGCCGAGGCggaggaggaggaggaggagAACGTAAGTACGAGTGTCAGTACTGTTGTAGA  260
            |||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct  181  AGCCGAGGCGGAGGAGGAGGAGGAGGAGAACGTAAGTATGAGTGTCAGTATTGTTGTAGA  240

Query  261  GAGTTTGGTAACTCACAAGCCTTAGGTGGTCACCAAAACGCTCACAAGAAAGAGCGTCAA  320
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  241  GAGTTTGGTAACTCACAAGCCTTAGGTGGTCACCAAAACGCTCACAAGAAAGAGCGTCAA  300

Query  321  CAGCTTAAACGTGCTCAGCTTCAAGCTACACGAAACGCAGCCGCGAATTTCTCAAACGCT  380
            |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct  301  CAGCTTAAACGTGCTCAGCTTCAAGCTACACGAAACGCAGCCGCAAATTTCTCAAACGCT  360

Query  381  GGATCAGCGTCTCAGTTTTTAAGGAATCCTATAGTCTCTGCTTTTGCTCCTCCGCCTCAT  440
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  361  GGATCAGCGTCTCAGTTTTTAAGGAATCCTATAGTCTCTGCTTTTGCTCCTCCGCCTCAT  420

Query  441  CTTTTATCATCATCCGCCGTGTCTCAGCCTATGGGAGGTCCTTGGATGTATCTTCCACGT  500
            ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct  421  CTTTTATCATCATCCGCCGTGCCTCAGCCTATGGGAGGTCCTTGGATGTATCTTCCACGT  480

Query  501  GTCTCTCCCTCTCAGCTGCACGTGTCGCATGGTTGCGTGATTCAGGATGGTTCGGGTGGT  560
            || ||||| ||||| || |||||||| ||||| ||||| || || |||||||||||||||
Sbjct  481  GTTTCTCCATCTCAACTTCACGTGTCTCATGGCTGCGTCATCCAAGATGGTTCGGGTGGT  540

Query  561  GCGAGTACGGGCGGGTTCTCGTACGAGTATGGGGCTCGTGATTCAGGGTTTGGAGTAGTT  620
            ||| || | || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  541  GCGGGTGCTGGTGGGTTCTCGTACGAGTATGGGGCTCGTGATTCAGGGTTTGGAGTAGTT  600

Query  621  GGGCCTCAGATGAGACATGTTCAGGCCCATGGGCCGAGACCATCGGGTAATGGGTTTTCC  680
            ||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||| 
Sbjct  601  GGGGCTCAGATGAGACATGTTCAGGCCCATGGGCCGAGACCATCGGTTAATGGGTTTTCA  660

Query  681  ACAGAAGTAGGAACTACTTTTGATGATGGTTTAGGGTTGGATTTGCATCTCAGTCTTGCA  740
            | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  661  AGAGAAGTAGGAACTACTTTTGATGATGGTTTAGGGTTGGATTTGCATCTCAGTCTTGCA  720

Query  741  CCAGCTGGTCATTGA  755
            || ||||||||||||
Sbjct  721  CCTGCTGGTCATTGA  735


> AT1G67030.1 | Symbols: ZFP6 | zinc finger protein 6 | chr1:25016543-25017512 
FORWARD LENGTH=970
Length=970

 Score =  152 bits (82),  Expect = 5e-36
 Identities = 101/110 (92%), Gaps = 2/110 (2%)
 Strand=Plus/Plus

Query  230  ACGTAAGTACGAGTGTCAGTACTGTTGTAGAGAGTTTGGTAACTCACAAGC-CTTAGGTG  288
            |||||||||||||||||| ||||||||||||||||||| |||||| ||||| ||| ||||
Sbjct  215  ACGTAAGTACGAGTGTCAATACTGTTGTAGAGAGTTTGCTAACTCTCAAGCTCTT-GGTG  273

Query  289  GTCACCAAAACGCTCACAAGAAAGAGCGTCAACAGCTTAAACGTGCTCAG  338
            ||||||||||||||||||||||||||||||| |  ||||||||||| |||
Sbjct  274  GTCACCAAAACGCTCACAAGAAAGAGCGTCAGCTTCTTAAACGTGCACAG  323



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 37725844397


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5