BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg926114
Length=875
Score E
Sequences producing significant alignments: (Bits) Value
AT1G68370.1 | Symbols: ARG1 | Chaperone DnaJ-domain superfamily... 331 6e-90
> AT1G68370.1 | Symbols: ARG1 | Chaperone DnaJ-domain superfamily
protein | chr1:25631745-25634738 REVERSE LENGTH=1745
Length=1745
Score = 331 bits (179), Expect = 6e-90
Identities = 364/448 (81%), Gaps = 33/448 (7%)
Strand=Plus/Plus
Query 412 TTACAGAGTACATCCTACACAATTGAGGCACTATGTGCCAAGACTTATGAGGATACAATA 471
||| ||| | |||| ||||| ||||| ||||| ||||||||||| ||||||||||||| |
Sbjct 1026 TTA-AGACTGCATCTTACACGATTGAAGCACTCTGTGCCAAGACCTATGAGGATACAACA 1084
Query 472 GAGAAGTTGAAA-GAGATTGAAGCTCAGGTTTTAACAAAGAGATTTGATTTGCCGCAATT 530
|||||||| ||| |||||||||||||| | |||| ||||||| | || ||
Sbjct 1085 GAGAAGTT-AAAGGAGATTGAAGCTCAAATCTTAAGAAAGAGA----A----ACG-AA-C 1133
Query 531 TGAGACAGAGTACCAGCAGTTGGAGATAGAGTATC-ACAAAGCTTTGGCGCGTTTTGAAA 589
| | | | |||||| || | |||||| | | |||||||||||||| ||| ||
Sbjct 1134 T--G-C---G-----GCAGTTTGAAACAGAGTACCGA-AAAGCTTTGGCGCGGTTTCAAG 1181
Query 590 AAGGGACCAAAAGATATTCGCAGGAGATGCAATA-TGTGGATGAACTGCTAAAGCAACGG 648
||| ||||| |||||| | ||||||| ||| | |||||||||||||||||||||||||
Sbjct 1182 AAGTTACCAACAGATATACACAGGAGAAACAA-ACTGTGGATGAACTGCTAAAGCAACGG 1240
Query 649 GATTCAATCCGTTCGTCTTTCTCTGTTGTGAAGACACCAAGCGGCAACAACTTGAGCAAT 708
||| |||||| |||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1241 GATACAATCCATTCGACCTTCTCTGTTGTGAAGACACCAAGCGGCAACAACTTGAGCAAT 1300
Query 709 GGAAGTAGCAGCAAAGCTCAGGGTGAGGAATCAAAAGGTGAGGGGGATAGTGTGGTAGAA 768
||||||||||||||||||||||| || |||||||||||||| |||||||||| || ||||
Sbjct 1301 GGAAGTAGCAGCAAAGCTCAGGGAGATGAATCAAAAGGTGATGGGGATAGTGCGGGAGAA 1360
Query 769 GAAGGAG-AACCAGAGAGTAAAAACAGATCCAAAAACAAATGGTTCAACTTCAACCTCGA 827
||||| | ||| ||||| || | ||| |||||| | |||||||||||||| ||||| |
Sbjct 1361 GAAGGCGGAAC-AGAGAATAGAGACAAATCCAAGAGGAAATGGTTCAACTTGAACCTAAA 1419
Query 828 TGGATATGAAAATAAGAAGCTTGATTGA 855
|||| ||| ||||||||||| ||||
Sbjct 1420 AGGATCTGA---TAAGAAGCTTGGTTGA 1444
Score = 326 bits (176), Expect = 3e-88
Identities = 240/272 (88%), Gaps = 0/272 (0%)
Strand=Plus/Plus
Query 146 TCAACAACCTAGGTGTTCCCATTAAAACTAGTGTAAATGCCAATGTTCTTGAAGAAGCTA 205
||| ||| |||||||| || || || |||| |||| ||| |||||||||||||| ||||
Sbjct 543 TCAGCAAACTAGGTGTGCCTATCAAGACTACTGTATCTGCTAATGTTCTTGAAGAGGCTA 602
Query 206 GGAATGGAAATTTTACACTTAAGCCTCTTCCGATTGGTACATCAGTTAGTGGGAAGGTAG 265
|||||||| | ||||| ||| ||||||||| ||||| |||||||||||||||||||| |
Sbjct 603 TGAATGGAACTGTTACAGTTAGGCCTCTTCCTATTGGAACATCAGTTAGTGGGAAGGTTG 662
Query 266 ACAAGCAACACGCTGAtttttttCGAGTTACGATAAGTGAAGAACAAGCTAAATCAGGGG 325
| |||||| |||| |||||||| ||||||||||||||||| |||||||| |||||||||
Sbjct 663 AGAAGCAATGCGCTCATTTTTTTGGAGTTACGATAAGTGAACAACAAGCTGAATCAGGGG 722
Query 326 TTGTTGTAAGAGTAACATCAACAGAACAAAGTAAATTTAAGTTACTTTATTTTGAGCAAG 385
||||||| |||||||| ||||||| |||||||||||||||||||||||||||||||||||
Sbjct 723 TTGTTGTTAGAGTAACTTCAACAGCACAAAGTAAATTTAAGTTACTTTATTTTGAGCAAG 782
Query 386 ATTCAAATGGCGGCTATGGATTAGCCTTACAG 417
|||||| ||| ||||||||||| |||||||||
Sbjct 783 ATTCAAGTGGTGGCTATGGATTGGCCTTACAG 814
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42699024950
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5