BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg926115
Length=1292
Score E
Sequences producing significant alignments: (Bits) Value
AT1G68370.1 | Symbols: ARG1 | Chaperone DnaJ-domain superfamily... 2102 0.0
> AT1G68370.1 | Symbols: ARG1 | Chaperone DnaJ-domain superfamily
protein | chr1:25631745-25634738 REVERSE LENGTH=1745
Length=1745
Score = 2102 bits (1138), Expect = 0.0
Identities = 1230/1276 (96%), Gaps = 0/1276 (0%)
Strand=Plus/Plus
Query 17 GAAGATGAGCGCGAAAAAGCTTGAAGGTTCGTCGGCTCCGGCGAATCGACGGGATCCGTA 76
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 208 GAAGATGAGCGCGAAAAAGCTTGAAGGTTCGTCGGCTCCGGCGAATCGACGGGATCCGTA 267
Query 77 CGAGGTTCTTTGTGTATCAAAGGACGCTAATGATCAAGAAATCAAATCCGCTTACAGAAA 136
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 268 CGAGGTCCTTTGTGTATCAAAGGACGCTAATGATCAAGAAATCAAATCCGCTTACAGAAA 327
Query 137 ATTAGCTCTCAAGTATCATCCGGATAAGAATGCCAACAATCCTGATGCTTCTGAGCTTTT 196
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 328 ATTAGCTCTCAAGTATCATCCGGATAAGAATGCGAACAATCCTGATGCTTCTGAGCTTTT 387
Query 197 CAAGGAAGTTGCATTTTCTTATAGCATTTTGTCTGACCCTGAAAAGAGAAGGCACTATGA 256
|||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 388 CAAGGAAGTTGCATTTTCGTATAGCATTTTGTCTGATCCTGAAAAGAGAAGGCACTATGA 447
Query 257 CAATGCAGGATTTGAGGCACTCGATGCTGATGGAATGGACATGGAAATTGACTTGTCAAA 316
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 448 CAATGCAGGATTTGAGGCACTCGATGCTGATGGAATGGATATGGAAATTGACTTGTCAAA 507
Query 317 CCTCGGAACTGTAAATACCATGTTTGCAGCATTATTCAGCAAACTAGGTGTTCCTATCAA 376
|||||| || ||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 508 CCTCGGGACCGTAAATACCATGTTTGCAGCATTGTTCAGCAAACTAGGTGTGCCTATCAA 567
Query 377 GACTACTGTGTCTGCCAATGTTCTTGAAGAGGCTATGAATGGAACTGTTACAGTTAGACC 436
||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 568 GACTACTGTATCTGCTAATGTTCTTGAAGAGGCTATGAATGGAACTGTTACAGTTAGGCC 627
Query 437 CCTTCCTATTGGAACATCAGTTAGTGGGAAGGTTGAAAAGCAATGCGCCCAtttttttGG 496
||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 628 TCTTCCTATTGGAACATCAGTTAGTGGGAAGGTTGAGAAGCAATGCGCTCATTTTTTTGG 687
Query 497 AGTTACTATAAGTGAACAACAAGCTGAATCAGGGGTTGTTGTTAGAGTTACTTCAACAGC 556
|||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 688 AGTTACGATAAGTGAACAACAAGCTGAATCAGGGGTTGTTGTTAGAGTAACTTCAACAGC 747
Query 557 ACAAAGTAAATTTAAGTTACTTTATTTTGAGCAAGATTCAAGTGGCGGCTATGGATTGGC 616
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 748 ACAAAGTAAATTTAAGTTACTTTATTTTGAGCAAGATTCAAGTGGTGGCTATGGATTGGC 807
Query 617 CTTACAGGAAGAGAGCGAGAAAACAGGCAAGGTGACATCAGCTGGCATGTATTTCTTACA 676
||||||||||||| | ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 808 CTTACAGGAAGAGCGTGAGAAAACAGGGAAGGTGACATCAGCTGGCATGTATTTCTTACA 867
Query 677 TTTTCAAGTGTATAGAATGGATTCAACTGTCAATGCGTTGGCTGCAGCCAAGGACCCTGA 736
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 868 TTTTCAAGTGTATAGAATGGATACAACTGTCAATGCGTTGGCTGCAGCCAAGGACCCTGA 927
Query 737 ATCTGCTTTCTTCAAGCGATTGGAAGGTCTTCAACCTTGTGAGGTTTCGGAACTGAAAGC 796
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 928 ATCTGCTTTCTTCAAGCGATTGGAAGGTCTTCAACCTTGTGAGGTTTCGGAACTGAAAGC 987
Query 797 TGGCACACATATATTTGCCGTTTACGGTGATAACTTCTTTAAGACTGCATCCTACACGAT 856
|||||| ||||||||||| ||||| |||||||| ||||||||||||||||| ||||||||
Sbjct 988 TGGCACGCATATATTTGCAGTTTATGGTGATAATTTCTTTAAGACTGCATCTTACACGAT 1047
Query 857 TGAGGCACTCTGTGCCAAGACCTATGAGGATACAACAGAGAAGTTGAAGGAGATTGAAGC 916
||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1048 TGAAGCACTCTGTGCCAAGACCTATGAGGATACAACAGAGAAGTTAAAGGAGATTGAAGC 1107
Query 917 TCAAATCTTAAGAAAGAGAAACGAGTTGCGGCAGTTTGAAACAGAGTACCGAAAAGCTTT 976
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1108 TCAAATCTTAAGAAAGAGAAACGAACTGCGGCAGTTTGAAACAGAGTACCGAAAAGCTTT 1167
Query 977 GGCGCGGTTTCAAGAAGTCACCAACAGATACACGCAGGAGAAGCAAACTGTGGATGAACT 1036
|||||||||||||||||| ||||||||||| || |||||||| |||||||||||||||||
Sbjct 1168 GGCGCGGTTTCAAGAAGTTACCAACAGATATACACAGGAGAAACAAACTGTGGATGAACT 1227
Query 1037 GCTAAAACAACGGGATACAATCCATTCGACCTTCTCTGTCGTGAAGACACCAAGCAGCAA 1096
|||||| |||||||||||||||||||||||||||||||| ||||||||||||||| ||||
Sbjct 1228 GCTAAAGCAACGGGATACAATCCATTCGACCTTCTCTGTTGTGAAGACACCAAGCGGCAA 1287
Query 1097 CAACTTGAGCAATGGAAGTAGCAGCAAAGCTCAGGGAGAGGAATCAAAAGGGGAAGGGGA 1156
||||||||||||||||||||||||||||||||||||||| ||||||||||| || |||||
Sbjct 1288 CAACTTGAGCAATGGAAGTAGCAGCAAAGCTCAGGGAGATGAATCAAAAGGTGATGGGGA 1347
Query 1157 TAGTGCAGGAGAAGAAGGCGGAACAGAGAGTAGAGACAAATCCAAGAGGAAATGGTTCAA 1216
|||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1348 TAGTGCGGGAGAAGAAGGCGGAACAGAGAATAGAGACAAATCCAAGAGGAAATGGTTCAA 1407
Query 1217 CTTGAACCTAAAAGGATCTGATAAGAAGCTTGGTTAACCAGAACGCGGATTTGTTGCGGG 1276
||||||||||||||||||||||||||||||||||| | |||||| |||||||||||||||
Sbjct 1408 CTTGAACCTAAAAGGATCTGATAAGAAGCTTGGTTGATCAGAACACGGATTTGTTGCGGG 1467
Query 1277 TCATTGGTATTTTGTT 1292
||||||||||||||||
Sbjct 1468 TCATTGGTATTTTGTT 1483
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63553889970
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5