BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg926119
Length=1357
Score E
Sequences producing significant alignments: (Bits) Value
AT1G68410.1 | Symbols: | Protein phosphatase 2C family protein... 2102 0.0
> AT1G68410.1 | Symbols: | Protein phosphatase 2C family protein
| chr1:25650001-25652793 REVERSE LENGTH=1796
Length=1796
Score = 2102 bits (1138), Expect = 0.0
Identities = 1286/1358 (95%), Gaps = 7/1358 (1%)
Strand=Plus/Plus
Query 1 GTCTTT-GAGAAGTTGCTACAATGGCGTCTAGAGAAGGAAAGAGACGTAATCATCATCAT 59
|||||| |||||||| |||||||||||||||||||||||||||||| | | |||||
Sbjct 204 GTCTTTCAAGAAGTTGTTACAATGGCGTCTAGAGAAGGAAAGAGACG---T-A--ATCAT 257
Query 60 AATCATCATGATGAGAAGCTTGTGCCTCTTGCTGCTTTGATAAGTAGAGAGACGAAAGCT 119
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 258 AATCATGATGATGAGAAGCTTGTGCCTCTTGCTGCTTTGATAAGTAGAGAGACGAAAGCT 317
Query 120 GCTAAAATGGAGAAACCTATTGTGAGATTTGGACAAGCTGCTCAATCTAGGAAAGGAGAA 179
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 318 GCTAAAATGGAGAAACCGATTGTGAGATTTGGACAAGCTGCTCAATCTAGGAAAGGAGAA 377
Query 180 GATTATGTCTTGATCAAGACTGATAGTCTTCGAGTTCCTTCCAATTCTTCAACTGCTTTC 239
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 378 GATTATGTCTTGATCAAGACTGATAGTCTTCGTGTTCCTTCCAATTCTTCAACTGCTTTC 437
Query 240 TCTGTTTTTGCGGTATTTGATGGGCACAATGGAAAAGCAGCAGCGGTTTATACAAGGGAG 299
|||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 438 TCTGTTTTTGCGGTATTTGATGGGCATAATGGAAAAGCGGCAGCGGTTTATACAAGGGAG 497
Query 300 AATCTGTTGAATCATGTTATTAGTGCTCTTCCTAGTGGGCTTAGCCGTGATGAGTGGCTT 359
||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 498 AATCTGTTGAACCATGTTATTAGTGCTCTTCCTAGTGGGCTTAGCCGTGACGAGTGGCTT 557
Query 360 CATGCTTTACCTCGTGCATTAGTTTCTGGATTTGTGAAGACAGATAAGGAGTTTCAGAGC 419
|| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 558 CACGCTTTACCTCGTGCATTAGTTTCTGGATTTGTGAAGACTGATAAGGAGTTTCAGAGC 617
Query 420 AGAGGGGAAACTTCTGGAACAACAGCAACGTTTGTGATAGTAGATGGATGGACTGTGACC 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 618 AGAGGGGAAACTTCTGGAACAACAGCAACGTTTGTGATAGTAGATGGATGGACTGTGACC 677
Query 480 GTTGCGTGTGTTGGGGATTCGCGTTGCATCTTGGATACTAAGGGTGGTTCAGTTTCCAAC 539
||||| |||||||| || ||||| |||||||||||||||||||||||||||||||| |||
Sbjct 678 GTTGCATGTGTTGGCGACTCGCGCTGCATCTTGGATACTAAGGGTGGTTCAGTTTCTAAC 737
Query 540 CTTACTGTGGATCACAGGCTTGAAGATAATACAGAAGAGAGGGAACGGGTTACTGCTAGT 599
|||||||| |||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 738 CTTACTGTTGATCACAGGCTTGAAGATAATACAGAAGAGAGGGAACGCGTTACTGCGAGT 797
Query 600 GGTGGAGAAGTTGGCAGGCTAAGCATTGTCGGAGGTGTTGAGATTGGTCCTTTACGGTGT 659
||||||||||||||||||||||||||||| ||||| |||||||||||||| ||||||||
Sbjct 798 GGTGGAGAAGTTGGCAGGCTAAGCATTGTTGGAGGCGTTGAGATTGGTCCACTACGGTGT 857
Query 660 TGGCCTGGAGGTCTCTGCCTTTCAAGGTCTATCGGGGATATGGATGTCGGGGAGTTCATT 719
|||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 858 TGGCCTGGAGGTCTCTGCCTTTCAAGGTCTATTGGGGATATGGATGTTGGGGAGTTCATT 917
Query 720 GTTCCAGTTCCCTTTGTAAAGCAAGTGAAGCTATCAAACATTGGCGGAAGGCTTATTATC 779
||||||||||||||||||||||||||||||||||||||| |||| ||||||||||| ||
Sbjct 918 GTTCCAGTTCCCTTTGTAAAGCAAGTGAAGCTATCAAACCTTGGAGGAAGGCTTATCATT 977
Query 780 GCCTCGGATGGCATATGGGATGCTCTCTCCTCAGAATTGGCTGCCCAAACTTGCCGTGGA 839
|| || |||||||||||||||||||||||||||||| | || || |||||||||||||
Sbjct 978 GCATCAGATGGCATATGGGATGCTCTCTCCTCAGAAGTCGCAGCTAAAACTTGCCGTGGG 1037
Query 840 TTACCCGCTGATCTAGCTGCAAGACAAGTAGTTAAGGAAGCATTGAGAAAAAGGGGACTT 899
||| | ||||| || ||||| |||||||||||||||||||||||||||| ||||||||||
Sbjct 1038 TTATCTGCTGAACTTGCTGCTAGACAAGTAGTTAAGGAAGCATTGAGAAGAAGGGGACTT 1097
Query 900 AAGGATGACACAACCTGCATTGTGGTTGACATAATCCCACCCGAGAACTTCCAAGAGCCA 959
|||||||||||||| ||||||||||| ||||||||||||||||| ||||||||||| |||
Sbjct 1098 AAGGATGACACAACTTGCATTGTGGTCGACATAATCCCACCCGAAAACTTCCAAGAACCA 1157
Query 960 CCGCCTTCACCTCCTAAGAGGCACAACAACTTCTTTAAATCATTACTCTTTAGAAAGAAA 1019
||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||
Sbjct 1158 CCGCCTTCACCTCCTAAGAAGCACAACAACTTCTTTAAATCATTACTCTTCAGAAAGAAA 1217
Query 1020 TCAAACTCATCTAACAAACTCTCCAAGAAACTTTCCACTGTTGGTATCGTTGAAGAACTC 1079
||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 1218 TCAAACTCATCTAACAAACTCTCCAAGAAACTTTCCACTGTTGGTATTGTTGAAGAGCTC 1277
Query 1080 TTCGAAGAAGGTTCCGCAATGCTCGCTGAAAGGTTAGGATCTGGTGACTGTTCTAAGGAA 1139
|||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1278 TTCGAAGAAGGTTCGGCAATGCTCGCTGAAAGGTTAGGATCAGGTGACTGTTCTAAGGAA 1337
Query 1140 TCAACAACAGGAGGAGGGATATTCACGTGTGCGATATGTCAACTAGACTTAGCTCCAAGC 1199
|||||||||||||||||||||||||||||||| ||||| ||||||||| |||||||||||
Sbjct 1338 TCAACAACAGGAGGAGGGATATTCACGTGTGCCATATGCCAACTAGACCTAGCTCCAAGC 1397
Query 1200 GAGGGAATATCAGTCCATGCAGGTTCAATCTTCTCGACAAGTCTAAAACCGTGGCAAGGA 1259
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1398 GAGGGAATATCAGTCCACGCAGGTTCAATCTTCTCGACAAGTCTAAAACCGTGGCAAGGA 1457
Query 1260 CCGTTCTTGTGCACAGACTGCCGTGACAAAAAGGACGCAATGGAAGGGAAACGTCCAAGC 1319
|||||||| |||||||| || ||||||||||| ||||| ||||||||||||||||||||
Sbjct 1458 CCGTTCTTATGCACAGATTGTCGTGACAAAAAAGACGCGATGGAAGGGAAACGTCCAAGT 1517
Query 1320 GGAGTTAAAGTCATATAGAATGAAAGATGGTAATCTGC 1357
|||||||||||||| |||| ||||||||||||||||||
Sbjct 1518 GGAGTTAAAGTCATCTAGATTGAAAGATGGTAATCTGC 1555
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66816925395
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5