BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg926121
Length=1534
Score E
Sequences producing significant alignments: (Bits) Value
AT5G56680.1 | Symbols: SYNC1, EMB2755, SYNC1 ARATH | Class II a... 569 2e-161
AT1G70980.1 | Symbols: SYNC3 | Class II aminoacyl-tRNA and biot... 479 4e-134
AT5G38750.1 | Symbols: | asparaginyl-tRNA synthetase family | ... 270 2e-71
AT1G68420.1 | Symbols: | Class II aaRS and biotin synthetases ... 224 2e-57
> AT5G56680.1 | Symbols: SYNC1, EMB2755, SYNC1 ARATH | Class II
aminoacyl-tRNA and biotin synthetases superfamily protein |
chr5:22936543-22939036 FORWARD LENGTH=2016
Length=2016
Score = 569 bits (308), Expect = 2e-161
Identities = 489/573 (85%), Gaps = 25/573 (4%)
Strand=Plus/Plus
Query 956 TGACATGGAACTTAT-G--AAGAATGTCGACGAAGCCTGCATTCACAGGCTACAAA-TGG 1011
||||||||||||||| | |||||| ||||| || |||||| |||||||| ||| |||
Sbjct 1260 TGACATGGAACTTATGGCTAAGAATTTCGACTCAGGATGCATTGACAGGCTA-AAATTGG 1318
Query 1012 TTGCCT-TGACTTCGTTTGAACG-AGTAACATACACCAAAGCAATA-ACTCTACTCGAGG 1068
|||||| | ||| |||||| || | |||||||||| ||||||||| | ||||| ||||
Sbjct 1319 TTGCCTCT-ACTCCGTTTGGGCGTA-TAACATACACTAAAGCAATAGA-GCTACTTGAGG 1375
Query 1069 AAGCTGTGGCTAAAGGAAAGAAATTTGAGAACCAA-GTGGAGCGGAGAATGGACTTAGCA 1127
|||||||||||||||||||| ||||||| || ||| |||||| || |||| ||||||||
Sbjct 1376 AAGCTGTGGCTAAAGGAAAGGAATTTGATAA-CAATGTGGAGTGGGGAATCGACTTAGCC 1434
Query 1128 TCTGAGCATGAAAGATACTTAACAGAGGTTTTGTATAAAAAGCCTGTTATTGTCTATAAC 1187
|| ||||||||||||||||| ||||||||| ||| | ||||||| ||||||||||||||
Sbjct 1435 TCGGAGCATGAAAGATACTTGACAGAGGTTCTGTTTCAAAAGCCACTTATTGTCTATAAC 1494
Query 1188 TACCCGAAA-GAGATCAAAGCTTTCTACATGAGACTTAACGATGATGGA-AAGACAGTTG 1245
||||||||| || ||||||||||| ||||||||||||||||||||| || ||||||||||
Sbjct 1495 TACCCGAAAGGA-ATCAAAGCTTTTTACATGAGACTTAACGATGAT-GAGAAGACAGTTG 1552
Query 1246 CTG-CATTTGATGTCCTCGTTCCAAAGGTTGGAGAACTCATTGGTGGAAGCCAAAGGGAA 1304
||| || | |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1553 CTGCCA-TGGATGTCCTCGTTCCAAAGGTTGGAGAACTCATTGGTGGAAGCCAAAGGGAA 1611
Query 1305 GAACGGATGGACGTTCTCATGGAAA-GA--ATGGAGGAGAAGGGTCTACCAATAAAGGAA 1361
||||| || | | | |||| ||| || || ||||||| |||||| |||||| || |
Sbjct 1612 GAACG-AT--ATGATGTCATCAAAAAGAGGATTGAGGAGATGGGTCTTCCAATAGAGCCA 1668
Query 1362 TACGAGTGGTACATTGACTTGAGACGTCATGGAACAGTGAAGCATTCTGGATTTGGACTG 1421
|| ||||||||| | |||||| | ||| |||||||||||||||||| ||| ||||||||
Sbjct 1669 TATGAGTGGTACCTAGACTTGCGCCGTTATGGAACAGTGAAGCATTGTGGGTTTGGACTT 1728
Query 1422 GGCTTGGAGCGTATGCTTCTCTTTGCTACAGGAATGGATAATATTAGAGACGTTATTCCC 1481
||||| || |||||| ||||||| ||||| ||| | ||||| || ||||||||||||||
Sbjct 1729 GGCTTCGAACGTATGATTCTCTTCGCTACTGGACTTGATAACATCAGAGACGTTATTCCT 1788
Query 1482 TTCCCTCGCTATCCTGGAAGAGCTGACCTTTGA 1514
||||||||||||||||||| |||||| ||||||
Sbjct 1789 TTCCCTCGCTATCCTGGAAAAGCTGATCTTTGA 1821
> AT1G70980.1 | Symbols: SYNC3 | Class II aminoacyl-tRNA and biotin
synthetases superfamily protein | chr1:26762339-26764623
FORWARD LENGTH=1945
Length=1945
Score = 479 bits (259), Expect = 4e-134
Identities = 477/579 (82%), Gaps = 27/579 (5%)
Strand=Plus/Plus
Query 954 GATGACATGGAACTTAT-G--AAGAATGTCGACGAAGCCTGCATTCACAGGCTACAA-AT 1009
||||||||||||||||| | ||||| |||||||| | |||| | | |||||| || ||
Sbjct 1147 GATGACATGGAACTTATGGATAAGAACGTCGACGAGGGATGCACTAAAAGGCTA-AACAT 1205
Query 1010 GGTTGCCTTGA-CTTCGTTTGAA-CGAGTAACATACACCAAAGCAATA-ACTCTACTCGA 1066
||||||| | | |||||| || || ||||||||||| |||||||| | | ||| ||
Sbjct 1206 GGTTGCC-AAAGCCTCGTTT-AAGCGTGTAACATACACTGAAGCAATAGA-GCGACTTGA 1262
Query 1067 GGAAGCTGTGGCTAAAGGAAA-G--AAATTTGAGAACCAAGTGGAGCGGAGAATGGACTT 1123
| ||||||| ||| ||||||| | ||||| ||| |||||||| || |||| |||||
Sbjct 1263 GAAAGCTGTAGCTCAAGGAAAGGTTGTTTTTGATAACAAAGTGGAGTGGGGAATCGACTT 1322
Query 1124 AGCATCTGAGCATGAAAGATACTTAACAGAGG-T---TTTGTATAAAAAGCCTGTTATTG 1179
|| || ||||||||||||||||| ||||||| | |||| || ||||||| | ||||
Sbjct 1323 GGCCTCAGAGCATGAAAGATACTTGACAGAGGTTGAGTTTG-ATCAAAAGCCAATAATTG 1381
Query 1180 TCTATAACTACCCGAAA-GAGATCAAAGCTTTCTACATGAGACTTAACGATGATGGA-AA 1237
| ||||||||||||||| || ||||||||||| ||||||||||||||||||||| || ||
Sbjct 1382 TGTATAACTACCCGAAAGGA-ATCAAAGCTTTTTACATGAGACTTAACGATGAT-GAGAA 1439
Query 1238 GACAGTTGCTG-CATTTGATGTCCTCGTTCCAAAGGTTGGAGAACTCATTGGTGGAAGCC 1296
||||||||||| || | |||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1440 GACAGTTGCTGCCA-TGGATGTCCTTGTTCCAAAGGTTGGAGAACTCATTGGTGGAAGCC 1498
Query 1297 AAAGGGAAGAACGG-ATGGACGTTCTCATGGAAAGAATGGAGGAGAAGGGTCTACCAATA 1355
||||||||||||| ||| | ||| ||| | || || ||||||| ||||||||||||
Sbjct 1499 AAAGGGAAGAACGATATG-ATGTTATCAAACAGAGGATCGAGGAGATGGGTCTACCAATG 1557
Query 1356 AAGGAATACGAGTGGTACATTGACTTGAGACGTCATGGAACAGTGAAGCATTCTGGATTT 1415
|| ||| ||||||||| | |||||| | ||| |||||||||||||||||| |||||||
Sbjct 1558 GAGCCATATGAGTGGTACCTAGACTTGCGTCGTTATGGAACAGTGAAGCATTGTGGATTT 1617
Query 1416 GGACTGGGCTTGGAGCGTATGCTTCTCTTTGCTACAGGAATGGATAATATTAGAGACGTT 1475
||||| ||||| || |||||| ||| || ||||||||||| ||||| || ||||| |||
Sbjct 1618 GGACTTGGCTTCGAACGTATGATTCAGTTCGCTACAGGAATTGATAACATCAGAGATGTT 1677
Query 1476 ATTCCCTTCCCTCGCTATCCTGGAAGAGCTGACCTTTGA 1514
||||| ||||||||||||||||||| |||||| || |||
Sbjct 1678 ATTCCTTTCCCTCGCTATCCTGGAAAAGCTGATCTCTGA 1716
Score = 291 bits (157), Expect = 2e-77
Identities = 426/549 (78%), Gaps = 45/549 (8%)
Strand=Plus/Plus
Query 158 CGGTGGAGCTGGACTTGCCGGTCAGAAGG-TCGAAATCAGCGGGTGGGTTAAAAAGGGAA 216
||| |||||| ||| |||||||| |||| | | |||| | || |||||||||| ||||
Sbjct 120 CGGCGGAGCTAAACTCGCCGGTCAAAAGGTTAG-AATCGGTGGTTGGGTTAAAACCGGAA 178
Query 217 GGGAGCAAGGAAAAGGGACTTTCGCTTTTCTTGAGGTGAACGATGGATCCTG-CGCAGCG 275
| ||||||| ||||||||||| ||||| |||||||| |||||||| || || | |||||
Sbjct 179 GACAGCAAGGGAAAGGGACTTTTGCTTTCCTTGAGGTTAACGATGGGTCTTGTC-CAGCG 237
Query 276 AATCTTCAGGTCAAGGTGGATGC-T-TCTGTATCAGATCTCTCCAAGTTGGTTACGACCG 333
||||| ||||| | ||| ||| | | ||| ||| |||||||| | ||||||| |||| |
Sbjct 238 AATCTCCAGGTTATGGTTGATTCATCTCTTTAT--GATCTCTCTAGGTTGGTTGCGACTG 295
Query 334 GAACTAGTCTGACCATTGATGGTTG-TTTGAAGATTCCTCCGCAAGGTAAAGCTACGAAA 392
||||| || | || ||||||| | |||||||||||||||| ||||||||| | |||
Sbjct 296 GAACTTGTGTTACTGTTGATGG-AGTTTTGAAGATTCCTCCGGAAGGTAAAGGTTTGAAG 354
Query 393 CAGAAG-ATTGAGCTTAGCGCTGAGAAGGTCATTGAC-GTGGGAACAGTGGATCAACACG 450
||| || ||||||||||||| ||||| ||| |||| | |||||||| || ||| | |
Sbjct 355 CAG-AGTATTGAGCTTAGCGTTGAGACGGTGATTG-CGGTGGGAACTGTTGAT---C-C- 407
Query 451 GTAAAACTCCATACCCGATTCCTAAGACGAAGCTGACT-CTAGAGTATT-TGAGAGACCA 508
| ||| | || ||| |||||||||| ||| ||||| || |||| || | |||||
Sbjct 408 G----ACTACGTATCCGCTTCCTAAGACTAAGTTGACTCCT-GAGT-TTCTCAGAGA-TG 460
Query 509 TAC-T-AACTTTCGTGCAAGAACCACCACGATGGCAGCAGTTACAAGAATCCGACATAA- 565
| | | | | ||||| | || || | | ||| |||||||| |||||||||| |||
Sbjct 461 TGCTTCATC-TTCGTTCTAGGACTAACTTGATCTCAGCAGTTGCAAGAATCCG---TAAC 516
Query 566 G-ATTTG-TCTTGCGGCCCA-CGTTTTCTGTGATA-AACATGA-TAT-ATGTTACATTCA 619
| ||| | ||||| | || ||||| | | | | ||||| | | | | |||||||||
Sbjct 517 GCGCTTGCTTTTGCGACGCATAGTTTT-TTTCA-AGAACAT-AGTTTCCT-TTACATTCA 572
Query 620 CACTCCTATCATCACAACAAGTGATTGCGAAGGTGCTGGTGAAATGTTCCAAGTGACAAC 679
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 573 CACTCCTATCATCACAACAAGTGATTGTGAAGGTGCTGGTGAAATGTTCCAAGTGACAAC 632
Query 680 TTTGATCAA 688
||||||||
Sbjct 633 CTTGATCAA 641
> AT5G38750.1 | Symbols: | asparaginyl-tRNA synthetase family
| chr5:15522650-15523180 FORWARD LENGTH=408
Length=408
Score = 270 bits (146), Expect = 2e-71
Identities = 195/219 (89%), Gaps = 2/219 (1%)
Strand=Plus/Plus
Query 363 AAGATTCCTCCGCAAGGTAAAGCTACGAAACAGAAGATTGAGCTTAGCGCTGAGAAGGTC 422
|||||||||| |||||||||||||||||| ||| ||| ||||||| || ||||||| ||
Sbjct 166 AAGATTCCTCTGCAAGGTAAAGCTACGAAGGAGATGATCGAGCTTAACGTTGAGAAGTTC 225
Query 423 ATTGACGTGGGAACAGTGGATCAACACGGTAAAACTCCATACCCGATTCCTAAGA-CGAA 481
||||| ||||||||||||||||| | | || ||||||| ||| | |||||||| | ||||
Sbjct 226 ATTGATGTGGGAACAGTGGATCACCGCAGTGAAACTCCGTACTCAATTCCTAA-ATCGAA 284
Query 482 GCTGACTCTAGAGTATTTGAGAGACCATACTAACTTTCGTGCAAGAACCACCACGATGGC 541
||||||||||||||||||||||||||||||| | ||||||||||||||| ||| ||| ||
Sbjct 285 GCTGACTCTAGAGTATTTGAGAGACCATACTTATTTTCGTGCAAGAACCTCCATGATTGC 344
Query 542 AGCAGTTACAAGAATCCGACATAAGATTTGTCTTGCGGC 580
||||||||||||||||||||||||||| |||||||||||
Sbjct 345 AGCAGTTACAAGAATCCGACATAAGATGTGTCTTGCGGC 383
Score = 89.8 bits (48), Expect = 7e-17
Identities = 66/74 (89%), Gaps = 3/74 (4%)
Strand=Plus/Plus
Query 217 GGGAGCAAGGAAAAGGGACTTTCGCTTTTCTTGAGGTGAACGATGGATCCTGCGCAGCGA 276
|||||| ||||||| | |||| |||||||||| |||||| ||||||||||||||||||
Sbjct 98 GGGAGCTAGGAAAA---AGTTTCACTTTTCTTGAAGTGAACTATGGATCCTGCGCAGCGA 154
Query 277 ATCTTCAGGTCAAG 290
||||||||||||||
Sbjct 155 ATCTTCAGGTCAAG 168
> AT1G68420.1 | Symbols: | Class II aaRS and biotin synthetases
superfamily protein | chr1:25653893-25654156 FORWARD LENGTH=264
Length=264
Score = 224 bits (121), Expect = 2e-57
Identities = 127/130 (98%), Gaps = 0/130 (0%)
Strand=Plus/Plus
Query 819 ATGGGAGATGTGTATACATTTGGCCCGACTTTCCAGGCAGAGAAGTCTCACACTTCAAGG 878
|||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 1 ATGGGAGATGTGTATACATTTGCCCCGACTTTCCGGGCAGAGAAGTCTCACACTTCAAGG 60
Query 879 CATCTTGCTGAGTTCTGGATGGTTGAGGTTGAATTAGCTTTTGCCGGTGTAGAGGAAGCT 938
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CATCTTGCTGAGTTTTGGATGGTTGAGGTTGAATTAGCTTTTGCCGGTGTAGAGGAAGCT 120
Query 939 ATGAACTGCT 948
||||||||||
Sbjct 121 ATGAACTGCT 130
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75702421860
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5