BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg926122

Length=478
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G68430.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...   654    0.0  


> AT1G68430.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: biological_process unknown; 
LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; 
EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana 
protein match is: unknown protein (TAIR:AT1G66890.1); 
Has 35 Blast hits to 35 proteins in 6 species: Archae - 0; 
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 35; Viruses - 
0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:25654905-25655444 
REVERSE LENGTH=540
Length=540

 Score =  654 bits (354),  Expect = 0.0
 Identities = 436/475 (92%), Gaps = 7/475 (1%)
 Strand=Plus/Plus

Query  10   TTTCCAAA-TCCATGGCGACACTGCAGAGATTCAAGTTCTTGGGGACGCAGTGCGGAGTA  68
            |||||||| || ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct  4    TTTCCAAATTCTATGGCTACACTGCAGAGATTCAAGTTCTTGGGGACGCAGTGCGGAGTA  63

Query  69   GCAGCACAGAGCCCGACACGAAGTCCGAGTCCAAGGACAAGTCCGTTGGTACAACTTCGA  128
            |||||||| ||||||||||||||||||||||| ||||||||||| |||||||| ||||||
Sbjct  64   GCAGCACAAAGCCCGACACGAAGTCCGAGTCCGAGGACAAGTCCATTGGTACAGCTTCGA  123

Query  129  CAAAAGAAAACAACTCTAAAGATGCTTTTGAGTCTTGCATCGCCGAGCCGTCGAGAGCAG  188
            | |||||| |||||| ||||||||||||||||||||||||| ||||| || |||||||||
Sbjct  124  CGAAAGAAGACAACTTTAAAGATGCTTTTGAGTCTTGCATCTCCGAGTCGCCGAGAGCAG  183

Query  189  CAACCGTTGATTCAACATCATCACAAGGACGTAGCAGGACGCAAACTTAAAGACTTATTC  248
            |||||||||||||| |||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct  184  CAACCGTTGATTCATCATCATCACAAGGACGTAGCCGGACGGAAACTTAAAGACTTATTC  243

Query  249  GTCTCTTCGTCTTCCGTagaggaagaa---gaagaggaggagagaccgaaggggaaaaca  305
            |||||||||||||||| ||||||||||   |||||||| |||||||| ||||||||||||
Sbjct  244  GTCTCTTCGTCTTCCGCAGAGGAAGAACAAGAAGAGGACGAGAGACCAAAGGGGAAAACA  303

Query  306  aaagaagaagTTCTTGCAGCCATGGCAGCTAAATTGAATGCAACCGCTAGATTACAATGT  365
            |||||||||||||||||||||||||| |||||| |||||||| |  | ||||||||||||
Sbjct  304  AAAGAAGAAGTTCTTGCAGCCATGGCGGCTAAACTGAATGCAGCTTCAAGATTACAATGT  363

Query  366  GAGTCCACTGATGCAGCACCGGCTTGGTTCGGATTCAGCAAGCGGCTTCTTCAGCGAGCT  425
            |||||  ||||||||||||| | |||||||||||||||||| ||||||||||||||||||
Sbjct  364  GAGTCTGCTGATGCAGCACCAGTTTGGTTCGGATTCAGCAAACGGCTTCTTCAGCGAGCT  423

Query  426  TGGCGACCTAAGCTCGGTACCATTC-CTGAGTAATGTAACC-AATTTTCTTCTCT  478
            ||||| ||||| || |||||||||| | ||||||||||||| |||||||||||||
Sbjct  424  TGGCGTCCTAAACTTGGTACCATTCAC-GAGTAATGTAACCCAATTTTCTTCTCT  477



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22756068591


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5