BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg926124

Length=520
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G68450.1 | Symbols:  | VQ motif-containing protein | chr1:25...   643    0.0  


> AT1G68450.1 | Symbols:  | VQ motif-containing protein | chr1:25661501-25662239 
REVERSE LENGTH=739
Length=739

 Score =  643 bits (348),  Expect = 0.0
 Identities = 455/504 (90%), Gaps = 18/504 (4%)
 Strand=Plus/Plus

Query  1    CTCTTGATATATTTACCTACCATGATTCCAACAAGATGCAATGAGATCAACGGCTCACGT  60
            ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  40   CTCTTGATATATTCACCTACCATGATTCCAACAAGATGCAATGAGATCAACGGCTCACGT  99

Query  61   CCTCCGTCGCTAAAACTCGCCGGAGAATCCCACACCATCAAGAAAACGACGTCGTGTAAG  120
            ||| |||||||||||||||||||||||||||||||||||||||||||| |||| || |||
Sbjct  100  CCTTCGTCGCTAAAACTCGCCGGAGAATCCCACACCATCAAGAAAACGTCGTCTTGCAAG  159

Query  121  TCGAGGCCACGGCCACATAGCCGGGCCTCTCCAGTAATCATTTACGCGCATTCTCCGAAA  180
            |||| |||||| |||||| | ||||| ||||| || ||||| |||||||||||||| |||
Sbjct  160  TCGAAGCCACGACCACATGGACGGGCATCTCCGGTTATCATCTACGCGCATTCTCCAAAA  219

Query  181  GTGATCCACACGCGTGCCGAAGACTTCATGGCCTTGGTTCAAAGGCTCACGGGTCTAGAT  240
            ||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||| 
Sbjct  220  GTGATCCACACGCGTGCCGAAGACTTCATGGCCCTGGTTCAAAGGCTGACGGGTCTAGAC  279

Query  241  GAGATTATTAGACGGAACCCTAACGACGTCAGCGAATCGTCCTCTTCTGTGGTGACGGAA  300
            |||||||||||||||||| |||  |   |  |  |||| ||||||||||| |||||||||
Sbjct  280  GAGATTATTAGACGGAACACTA--G---T--G--AATCTTCCTCTTCTGTTGTGACGGAA  330

Query  301  GAGGGCCAAGAGGCTAACGTCGGTGATGACAACACGGCGGCTCCGTTTAGTCAGGAGAGA  360
            ||||          ||||||||| ||||| |||||||||||||||||||||||||| |||
Sbjct  331  GAGGT---------TAACGTCGGGGATGATAACACGGCGGCTCCGTTTAGTCAGGATAGA  381

Query  361  ACACAACGACAAAAGTTAACTGATATGCCATTGTTCACACCGAGCTCGATGACGTTGTTT  420
            ||||||||||| ||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct  382  ACACAACGACAGAAGTTAACTGATATGCCGTTGTTCACACCGAGCTCGATGACCTTGTTT  441

Query  421  GGTTCTCCAAATCAACTTATGTACATGTCACCGAACCGGACCGATTCATTTCGACCCTTG  480
            |||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct  442  GGTTCTCCAACTCAACTTATGTATATGTCACCGAACCGGACCGATTCATTTCGACCCTTG  501

Query  481  GTTTTTAAGTTCGAATAAGTCTTC  504
            |||||||||| |||||||| ||||
Sbjct  502  GTTTTTAAGTCCGAATAAGACTTC  525



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 24865902765


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5