BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg926128
Length=618
Score E
Sequences producing significant alignments: (Bits) Value
AT1G68490.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 985 0.0
> AT1G68490.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures;
EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT1G13390.2);
Has 125 Blast hits to 125 proteins in 18 species: Archae -
0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 125; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:25693449-25695476
FORWARD LENGTH=1337
Length=1337
Score = 985 bits (533), Expect = 0.0
Identities = 598/627 (95%), Gaps = 13/627 (2%)
Strand=Plus/Plus
Query 1 TTTGAATTCGAAAGAAAAAGATGAATCACTTTGCGGTTCAACCAAACGCTTTCGCTGCCG 60
||| |||||| ||| |||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 238 TTTAAATTCG-AAG-AAAAGATGAATCACTTTGCGGTTCAACCAAACGCGTTCGCTGCCG 295
Query 61 GCGGAGATTTGAGAAGCAGCTCCGTTTCTGTTGTTGAAAGAGATCAAACCACCGTCGTTT 120
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 296 GCGGAGATTTGAGAAGCAGCTCCGTTTCAGTTGTTGAAAGAGATCAAACCACCGTCGTTT 355
Query 121 GCCCAAAACCACGTCGTATTGGTCTCCGTAACAA-C--CACCATCCTTCTCGATCTCTCC 177
| |||||||||||||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct 356 GTCCAAAACCACGTCGTATTGGTCTCCGTAACAACCATCACCATCCTTCTCGATCTCTCC 415
Query 178 GTTGTTACTTCAGTCACCAATTGGAGCTTTGTGAATCCAAAGCAGAGACTGATATTTTGG 237
|||||||||||||||| |||||||||||||||||||||||||||||||||||||| || |
Sbjct 416 GTTGTTACTTCAGTCATCAATTGGAGCTTTGTGAATCCAAAGCAGAGACTGATATCTTAG 475
Query 238 ATATCATTCTCACCAAGGATGGTTATGGTTCAGAACAAGTTCATAAGCAGGTAATAGACT 297
||||||| ||||||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 476 ATATCATACTCACCAAGGATGGTTATGGTGCAGAACAAGTTAATAAGCAGGTAATAGACT 535
Query 298 CGCCGTCCCCGTTTTTATGTGGGTCGCCGCCGAGTAGAGTCGCTAACCCAATAACACAGG 357
|||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||
Sbjct 536 CGCCGTCCCCGTTTTTATGTGGGTCGCCGCCGAGCAGAGTCGCTAACCCATTAACACAGG 595
Query 358 ATGCTCGATTTCGAGATGAGATTGTATCGGTTTCTTCAGTGATTCCGCCTCCGTTGGGTT 417
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 596 ATGCTCGATTTCGAGATGAGATTGTATCGGTTTCTTCAGTGATTCCGCCTCAGTTGGGTT 655
Query 418 TACCTCCTTCATCATCTCCTTCTTC--C-TCTGGGAGGAAAGGAGGATGTGTTGTTAGAG 474
|||||||||| |||||||||||||| | |||||||||||||||||||||||||||||||
Sbjct 656 TACCTCCTTCTTCATCTCCTTCTTCTTCCTCTGGGAGGAAAGGAGGATGTGTTGTTAGAG 715
Query 475 GCAATTTTGGTAACAGCCCAAAGGTTAG-GATCGAAGGGTTTGATTGTCTTGACAGGGAC 533
|||||||||||||||||||||||||||| | | ||||||||||||||||||||||||||
Sbjct 716 GCAATTTTGGTAACAGCCCAAAGGTTAGAGTT-GAAGGGTTTGATTGTCTTGACAGGGAT 774
Query 534 AGCAGAAACTGCAGCATCCCTGCCTTGGCTTAGAAACTGAA-CCCGAA-CGAACCCTTTT 591
||||||||||||||||||||||||||||||||||||| ||| |||||| |||||||||||
Sbjct 775 AGCAGAAACTGCAGCATCCCTGCCTTGGCTTAGAAAC-GAAACCCGAAACGAACCCTTTT 833
Query 592 AGGATTTTCATACATACTCTTTTGAGT 618
|||||||||||||||||||||||||||
Sbjct 834 AGGATTTTCATACATACTCTTTTGAGT 860
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29788849171
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5