BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg926134
Length=1797
Score E
Sequences producing significant alignments: (Bits) Value
AT1G68530.1 | Symbols: CUT1, POP1, CER6, G2, KCS6 | 3-ketoacyl-... 2913 0.0
AT1G25450.1 | Symbols: KCS5, CER60 | 3-ketoacyl-CoA synthase 5 ... 1179 0.0
> AT1G68530.1 | Symbols: CUT1, POP1, CER6, G2, KCS6 | 3-ketoacyl-CoA
synthase 6 | chr1:25712588-25714807 REVERSE LENGTH=1861
Length=1861
Score = 2913 bits (1577), Expect = 0.0
Identities = 1736/1811 (96%), Gaps = 17/1811 (1%)
Strand=Plus/Plus
Query 1 TCATCTTCAAAAATACCCTAATCACATTTTGTAACAATAATAGAATTACACATTAAAACT 60
|||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 7 TCATCTTCAAAAATACCCTAATCACATTTTGTAACAATAATACAATTATACATTAAAACT 66
Query 61 CTCCGAAGATGCCTCAGGCACCGATGCCAGAGTTCTCTAGCTCGGTGAAGCTCAAGTACG 120
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 67 CTCCGACGATGCCTCAGGCACCGATGCCAGAGTTCTCTAGCTCGGTGAAGCTCAAGTACG 126
Query 121 TGAAACTTGGTTACCAATATTTGGTTAATCATTTCTTGAGTTTTCTTTTGATCCCGATCA 180
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 127 TGAAACTTGGTTACCAATATTTGGTTAACCATTTCTTGAGTTTTCTTTTGATCCCGATCA 186
Query 181 TGGCTATCGTCGCCGTTGAGCTTCTTCGGATGGGTCCTGGAGAGATCCTTAATGTTTGGA 240
||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 187 TGGCTATTGTCGCCGTTGAGCTTCTTCGGATGGGTCCTGAAGAGATCCTTAATGTTTGGA 246
Query 241 ACTCACTTCAGTTTGACCTAGTTCAGGTTCTATGTTCTTCCTTCTTTGTCATCTTCATCT 300
| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 247 ATTCACTCCAGTTTGACCTAGTTCAGGTTCTATGTTCTTCCTTCTTTGTCATCTTCATCT 306
Query 301 CCACCGTTTACTTCATGTCCAAGCCACGTACCATCTACCTCGTTGACTATTCTTGTTACA 360
|||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 307 CCACTGTTTACTTCATGTCCAAGCCACGCACCATCTACCTCGTTGACTATTCTTGTTACA 366
Query 361 AGCCACCTGTCACGTGTCGTGTCCCCTTCGCAACTTTCATGGAACACTCTCGTTTGAACC 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 367 AGCCACCTGTCACGTGTCGTGTCCCCTTCGCAACTTTCATGGAACACTCTCGTTTGATCC 426
Query 421 TCAAGGACAACCCTAAGAGCGTTGAGTTCCAAATGAGAATCCTTGAACGTTCTGGCCTCG 480
|||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 427 TCAAGGACAAGCCTAAGAGCGTCGAGTTCCAAATGAGAATCCTTGAACGTTCTGGCCTCG 486
Query 481 GTGAAGAGACTTGTCTCCCTCCGGCTATTCATTATATTCCTCCGACACCAACCATGGACG 540
|||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 487 GTGAGGAGACTTGTCTCCCTCCGGCTATTCATTATATTCCTCCCACACCAACCATGGACG 546
Query 541 CGGCTAGAAGTGAGGCTCAGATGGTTATCTTC-ACGGCCATGGACGATCTATTCAAGAAA 599
|||||||||| ||||||||||||||||||||| | ||||||||||||||| |||||||||
Sbjct 547 CGGCTAGAAGCGAGGCTCAGATGGTTATCTTCGA-GGCCATGGACGATCTTTTCAAGAAA 605
Query 600 ACCGGTCTTAAACCTAAAGACGTCGACATCCTTATCGTCAATTGCTCTCTTTTCTCTCCC 659
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 606 ACCGGTCTTAAACCTAAAGACGTCGACATCCTTATCGTCAACTGCTCTCTTTTCTCTCCC 665
Query 660 ACACCATCACTCTCAGCTATGGTCATCAACAAATATAAGCTTAGGAGTAATATCAAAAGC 719
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 666 ACACCATCGCTCTCAGCTATGGTCATCAACAAATATAAGCTTAGGAGTAATATCAAGAGC 725
Query 720 TTCAATCTCTCGGGGATGGGCTGCAGCGCGGGCCTCATCTCAGTTGATCTAGCCCGCGAC 779
|||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 726 TTCAATCTTTCGGGGATGGGCTGCAGCGCGGGCCTGATCTCAGTTGATCTAGCCCGCGAC 785
Query 780 TTGCTCCAAGTTCATCCCAATTCAAATGCAATCATCGTCAGCACGGAGATCATAACGCCT 839
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 786 TTGCTCCAAGTTCATCCCAATTCAAATGCAATCATCGTCAGCACGGAGATCATAACGCCT 845
Query 840 AATTACTATCAAGGAAACGAGAGAGCCATGTTGTTACCCAATTGCCTCTTCCGCATGGGC 899
|||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 846 AATTACTATCAAGGCAACGAGAGAGCCATGTTGTTACCCAATTGTCTCTTCCGCATGGGT 905
Query 900 GCGGCAGCCATACACATGTCAAACCGCCGCTCTGACCGGTGGCGAGCCAAATACAAGCTT 959
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 906 GCGGCAGCCATACACATGTCAAACCGCCGGTCTGACCGGTGGCGAGCCAAATACAAGCTT 965
Query 960 TCCCATCTGGTCCGGACCCACCGCGGTGCTGACGACAAGTCTTTCTACTGTGTCTACGAA 1019
||||| || |||||||| ||||| || |||||||||||||||||||||||||||||||||
Sbjct 966 TCCCACCTCGTCCGGACACACCGTGGCGCTGACGACAAGTCTTTCTACTGTGTCTACGAA 1025
Query 1020 CAGGAAGACAAAGAAGGACACGTTGGCATCAACTTGTCCAAAGATCTCATGGCTATCGCC 1079
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1026 CAGGAAGACAAAGAAGGACACGTTGGCATCAACTTGTCCAAAGATCTCATGGCCATCGCC 1085
Query 1080 GGTGAAGCCCTCAAGGCAAACATCACCACAATAGGTCCTTTGGTACTACCGGCGTCAGAA 1139
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1086 GGTGAAGCCCTCAAGGCAAACATCACCACAATAGGTCCTTTGGTCCTACCGGCGTCAGAA 1145
Query 1140 CAACTTCTCTTCCTCACGTCCCTAATCGGGCGTAAAATCTTCAACCCAAAATGGAAACCA 1199
||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 1146 CAACTTCTCTTCCTCACGTCCCTAATCGGACGTAAAATCTTCAACCCGAAATGGAAACCA 1205
Query 1200 TACATACCGGATTTCAAACTGGCCTTCGAACACTTCTGCATTCACGCAGGAGGCAGAGCG 1259
||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1206 TACATACCGGATTTCAAGCTGGCCTTCGAACACTTTTGCATTCACGCAGGAGGCAGAGCG 1265
Query 1260 GTTATCGACGAGCTCCAGAAGAACCTACAGCTATCAGGAGAACACGTTGAGGCCTCGAGA 1319
|| |||||||||||||| ||||| ||||| |||||||||||||||||||||||||| |||
Sbjct 1266 GTGATCGACGAGCTCCAAAAGAATCTACAACTATCAGGAGAACACGTTGAGGCCTCAAGA 1325
Query 1320 ATGACACTACATCGTTTTGGTAACACGTCATCGTCATCGTTGTGGTACGAGCTTAGCTAC 1379
|||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 1326 ATGACACTACATCGTTTTGGTAACACGTCATCTTCATCGTTATGGTACGAGCTTAGCTAC 1385
Query 1380 ATCGAGTCTAAAGGGAAAATGAGGAGAGGCGATCGTGTTTGGCAGATTGCGTTTGGAAGC 1439
|||||||||||||||| |||||||||||||||||| |||||||| || |||||||| ||
Sbjct 1386 ATCGAGTCTAAAGGGAGAATGAGGAGAGGCGATCGCGTTTGGCAAATCGCGTTTGGGAGT 1445
Query 1440 GGTTTTAAGTGTAACTCAGCCGTGTGGATGTGTAACCGTACGATTAAGACACCTAAGGAC 1499
||||| ||||||||||| |||||||||| ||||||||||||||||||||||||||||||
Sbjct 1446 GGTTTCAAGTGTAACTCTGCCGTGTGGAAATGTAACCGTACGATTAAGACACCTAAGGAC 1505
Query 1500 GGACCATGGTCCGATTGTATCGACCGTTACCCTGTCTTTATTCCCGAAGTTGTCAAACTC 1559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1506 GGACCATGGTCCGATTGTATCGACCGTTACCCTGTCTTTATTCCCGAAGTTGTCAAACTC 1565
Query 1560 TAAACTGAAAACGTCTTTGAACGGTTTAGTAATGGTTTGATTTTGTGTTACGGTTTAGGT 1619
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1566 TAAACTGAAAACGTCTTTGAACGGTTTAGTAACGGTTTGATTTTGTGTTACGGTTTAGGT 1625
Query 1620 TTATTTGGTCTCGGGATTTGGTTGAAAGAGGGGATTGAGAAATGG-AAGTTAGAGCGAAG 1678
||||||||||||||||||||||| |||| ||| |||||||||||| ||||||||| ||||
Sbjct 1626 TTATTTGGTCTCGGGATTTGGTTTAAAG-GGG-ATTGAGAAATGGGAAGTTAGAGAGAAG 1683
Query 1679 ------CA-----TAAATGTTTGTATTTAATTGCTCTGCATATACTTAAATCTCTGTTTT 1727
|| ||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1684 AAAAAGCAAAGCATAAATGTTTGTATTTAATTGCTCTGCATATACTTAAATCTCTGCTTT 1743
Query 1728 TCATTTGGGGTATTTTTTAGTTTCTCGTGCTGTAATTAATAACTTGTGGTGTA-TCAAAT 1786
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1744 TCATTTGGGGTATTTTTTAGTTTCTCGTGCTGTAATTAATAACTTGTGGTGTACTCAAAT 1803
Query 1787 AAGAATATTTC 1797
|||||||||||
Sbjct 1804 AAGAATATTTC 1814
> AT1G25450.1 | Symbols: KCS5, CER60 | 3-ketoacyl-CoA synthase
5 | chr1:8938479-8940387 REVERSE LENGTH=1784
Length=1784
Score = 1179 bits (638), Expect = 0.0
Identities = 1208/1484 (81%), Gaps = 36/1484 (2%)
Strand=Plus/Plus
Query 93 TTCTCTAGCTCGGTGAAGCTCAAGTACGTGAAACTTGGTTACCAATA-TTTGGTTAATC- 150
||||| ||||| |||||||| || || || ||||| ||||||||||| || | || |
Sbjct 115 TTCTCGAGCTCCGTGAAGCTTAAATATGTTAAACTCGGTTACCAATACCTT-ATCAA-CA 172
Query 151 A-TTTCTTGAGTTTTCTTTTGA-TCCCGATCATGGCTATCGTCGCCGTTGAGCTTCTTCG 208
| || ||| | | ||||||||| ||| | |||| || | ||||||| | |||||||| ||
Sbjct 173 ACTTCCTT-ACTCTTCTTTTGATTCCAG-TCATAGCAACCGTCGCCATCGAGCTTCTCCG 230
Query 209 GATGGGTCCTGG-AGAGATCCTTAATGT-TTGGAACTCACTTCAGTTTGACCTAGTTCAG 266
|||||||| || |||||| || | ||| || ||||||||| || || || || ||||
Sbjct 231 AATGGGTCC-GGAAGAGATTCTCAGTGTCTT-GAACTCACTCCACTTCGAGCTTCTTCAT 288
Query 267 GTTCTATGTTCTTCCTTCTTTGTCATCTTCATCTCCACCGTTTACTTCATGTCCAAGCCA 326
| || ||||| || ||| || | ||||| | || ||||||||||||||||||||||||
Sbjct 289 ATCCTTTGTTCCTCTTTCCTTATTATCTTTGTTTCAACCGTTTACTTCATGTCCAAGCCA 348
Query 327 CGTACCATCTACCTCGTTGACTATTCTTGTTACAAGCCACCTGTCACGTGTCGTGTCCCC 386
|||||| ||||||| || ||||| ||||| ||||| || ||||||||||| ||||||||
Sbjct 349 CGTACCGTCTACCTTGTGGACTACTCTTGCTACAAACCTCCTGTCACGTGCCGTGTCCCG 408
Query 387 TTCGCAACTTTCATGGAACACTCTCGTTTGAACCTCAAGGACAA-CCCTAAGAGCGTTGA 445
||| | | |||||||||||||||||| | | |||||| ||||| ||| ||||| || ||
Sbjct 409 TTCTCTTCGTTCATGGAACACTCTCGTCTCATCCTCAAAGACAATCCC-AAGAGTGTCGA 467
Query 446 GTTCCAAATGAGAATCCTTGAACGTTCTGGCCTCGGTGAAGAGACTTGTCTCCCTCCGGC 505
||||||||||||||||| || || || || || || |||||||||||||||||||| ||
Sbjct 468 ATTCCAAATGAGAATCCTCGAGCGATCAGGTCTAGGAGAAGAGACTTGTCTCCCTCCAGC 527
Query 506 TATTCATTATATTCCTCCGACACCAACCATGGACGCGGCTAGAAGTGAGGCTCAGATGGT 565
||||||||| || ||||| || ||||||||||| | || |||| ||||| || |||||
Sbjct 528 TATTCATTACATCCCTCCAACTCCAACCATGGAATCCGCAAGAAACGAGGCCCAAATGGT 587
Query 566 TATCTTCACGGCCATGGACGATCTATTCAAGAAAACCGGTCTTAAACCTAAAGACGTCGA 625
||||||||| |||||||| ||||| |||||||| || |||||||||||||||||| ||||
Sbjct 588 TATCTTCACCGCCATGGAAGATCTCTTCAAGAATACAGGTCTTAAACCTAAAGACATCGA 647
Query 626 CATCCTTATCGTCAATTGCTCTCTTTTCTCTCCCACACCATCACTCTCAGCTATGGTCAT 685
|||||| || || ||||||||||| ||||| || || || || ||||| |||||| | ||
Sbjct 648 CATCCTCATTGTTAATTGCTCTCTGTTCTCACCAACGCCGTCTCTCTCCGCTATGATTAT 707
Query 686 CAACAAATATAAGCTTAGGAGTAATATCAAAAGCT-TCAATCTCTCGGGGATGGGCTGCA 744
|||||| || |||||||||||||| |||||||||| | || || || |||||||| ||||
Sbjct 708 CAACAAGTACAAGCTTAGGAGTAACATCAAAAGCTAT-AACCTTTCCGGGATGGGATGCA 766
Query 745 GCGCGGGCCTCATCTCAGTTGATCTAGCCCGCGACTTGCTCCAAGTTCATCCCAATTCAA 804
|||| | || |||||||||||| |||| || || ||| | ||||| ||||| || || |
Sbjct 767 GCGCTAGTCTTATCTCAGTTGATGTAGCACGTGATTTGTTACAAGTCCATCCTAACTCCA 826
Query 805 ATGCAATCATCGTCAGCACGGAGATCATAACGCCTAATTACTATCAAGGA-AACGAGAGA 863
| |||||||| | ||||| |||||||| || |||||||||||| |||| || ||||||
Sbjct 827 ACGCAATCATAATTAGCACTGAGATCATTACTCCTAATTACTAT-AAGGGTAATGAGAGA 885
Query 864 GCCATGTTGTTACCCAAT-TGCCTCTTCCGCATGGGCG-CGGCAGCCATACACATGTCAA 921
||||||||| | ||||| ||||||||||| ||||| | || | ||||| | | | || |
Sbjct 886 GCCATGTTGCT-CCCAAACTGCCTCTTCCGTATGGGAGGCGCC-GCCATTCTCCTCTCTA 943
Query 922 ACCGCCGCTCTGACCGGTGGCGAGCCAAATACAAGCTT-TCCCATCTGGTCCGGACCCAC 980
||||| | || ||| |||||||||| || |||||| || | ||| || || |||||||
Sbjct 944 ACCGCAGATCCGACAGGTGGCGAGCTAAGTACAAG-TTATGCCACCTTGTTAGGACCCAT 1002
Query 981 CGCGGTGCTGACGACAAGTCTTTCTACTGTGTCTACG-AACAGGAAGACAAAGAA-GG-A 1037
|||||||| || ||||| || | | ||||||| || | |||||||||||||| || || |
Sbjct 1003 CGCGGTGCGGATGACAAATCCTACAACTGTGT-TATGGAACAGGAAGACAAA-AATGGTA 1060
Query 1038 CACGTTGGCATCAACTTGTCCAAAGATCTCATGGCTATCGCCGGTGAAGCCCTCAAGGCA 1097
|||| || ||||||||||| |||||||||||| | || ||||| |||||| | || ||
Sbjct 1061 -ACGTGGGAATCAACTTGTCTAAAGATCTCATGACCATTGCCGGAGAAGCCTTGAAAGCT 1119
Query 1098 AACATCACCACAATAGGTCCTTTGGTACTACCGGCGTCAGAACAACTTCTCTTCCTCACG 1157
|| ||||| || |||||||||||||| || ||||| || || || |||||||||||| |
Sbjct 1120 AATATCACTACCATAGGTCCTTTGGTCCTTCCGGCATCGGAGCAGCTTCTCTTCCTCTCA 1179
Query 1158 TCCCTAATCGGGCGTAAAATCTTCAACCCAAAATGGAAACCATACATACCGGATTTCAAA 1217
||||| ||||| |||||||||||||| ||||| ||||| || |||||||| ||||||||
Sbjct 1180 TCCCTTATCGGACGTAAAATCTTCAATCCAAAGTGGAAGCCGTACATACCAGATTTCAAG 1239
Query 1218 CTGGCCTTCGAACACTTCTGCATTCACGCAGGAGGCAGAGCGGTTATCGACGAGCTCCAG 1277
| ||||||||| || |||||||| ||||||||||| |||||||| || || ||||| ||
Sbjct 1240 CAGGCCTTCGAGCATTTCTGCATCCACGCAGGAGGAAGAGCGGTGATTGATGAGCTGCAA 1299
Query 1278 AAGAACCTACAGCTATCAGGAGAACACGTTGAGGCCTCGAGAATGACACTACATCGTTTT 1337
||||| |||||||| || ||||||||||| || || || ||||||||||||||| | |||
Sbjct 1300 AAGAATCTACAGCTGTCGGGAGAACACGTGGAAGCTTCAAGAATGACACTACATAGGTTT 1359
Query 1338 GGTAACACGTCATCGTCATCGTTGTGGTACGAGCTTAGCTACATCGAGTCTAAAGGGAAA 1397
||||| || || |||||||| || ||||| |||||||||||||| ||| || |||||| |
Sbjct 1360 GGTAATACATCGTCGTCATCATTATGGTATGAGCTTAGCTACATAGAGGCTCAAGGGAGA 1419
Query 1398 ATGAGGAGAGGCGATCGTGTTTGGCAGATTGCGTTT-GGAAGCGGTTTTAAGTGTAACTC 1456
|||| |||| |||| | ||||||||||| || ||| ||||| || || |||||||||||
Sbjct 1420 ATGAAGAGAAACGATAGGGTTTGGCAGATCGC-TTTCGGAAGTGGATTCAAGTGTAACTC 1478
Query 1457 AGCCGTGTGGATGTGTAACCGTACGATTAAGACACCTAA-GGACGGACCATGGTCCGATT 1515
||||| |||| |||||||||||||| |||||||| || ||| ||| | ||||| ||||
Sbjct 1479 CGCCGTTTGGAAATGTAACCGTACGATCAAGACACC-AACGGATGGAGCGTGGTCGGATT 1537
Query 1516 GTATCGACCGTTACCCTGTCTTTATTCCC-GAAGTTGTCAAACT 1558
||||||| || |||||||||||||| ||| |||||||| |||||
Sbjct 1538 GTATCGAACGATACCCTGTCTTTAT-CCCTGAAGTTGTTAAACT 1580
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 88905165195
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5