BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg926146

Length=525
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G68610.1 | Symbols: PCR11 | PLANT CADMIUM RESISTANCE 11 | ch...   765    0.0  


> AT1G68610.1 | Symbols: PCR11 | PLANT CADMIUM RESISTANCE 11 | 
chr1:25763623-25764105 FORWARD LENGTH=483
Length=483

 Score =  765 bits (414),  Expect = 0.0
 Identities = 457/478 (96%), Gaps = 2/478 (0%)
 Strand=Plus/Plus

Query  23   ATGAACCCTTCCTCCACCGACCAACCAAGCCAAGGCCGTGTCAAGGCCAAGGATTGGTCG  82
            ||||||| |||||| | |||||||||||||||||||||| ||||||||||||||||||||
Sbjct  1    ATGAACCTTTCCTCTAACGACCAACCAAGCCAAGGCCGTATCAAGGCCAAGGATTGGTCG  60

Query  83   ACTGATTTGTGTGAATGTTGGATGGACATAAACTCATGCTGCTTGACTTGTTGGTGCCCA  142
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct  61   ACTGATTTGTGTGAATGTTGGATGGACATAAACTCATGCTGCTTGACTTGTTGGTGCCCT  120

Query  143  TGTGTTGCCTTTGGACGCATCGCGGAAGTTGTAGACAGAGGATCCACATCGTGTGGTGTG  202
            |||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct  121  TGTGTTGCCTTTGGACGCATCGCGGAGGTTGTAGACAGAGGTTCCACATCGTGTGGTGTG  180

Query  203  AGCGGAGCGATGTACATGATCATATTCATGTTGACCGGATATGGAGGGAGCAGTCTCTAC  262
            |||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct  181  AGCGGAGCGATGTACATGATCATATTCATGTTGACCGGGTATGGAGGAAGCAGTCTCTAC  240

Query  263  TCTTGCTTTTACCGAACCAAACTAAGAGCACAATACAATCTCAAGGAGAGACCTTGTTGT  322
            ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct  241  TCTTGCTTTTACCGAACCAAACTTAGAGCCCAATACAATCTCAAGGAGAGACCTTGTTGT  300

Query  323  GACTGTTGTGTCCACTTTTGTTGCGAGCCATGCGCTCTTTGTCAAGAGTATAGGCAACTT  382
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  301  GACTGTTGTGTCCACTTTTGTTGCGAGCCATGCGCTCTTTGTCAAGAGTATAGGCAACTT  360

Query  383  CAACACAACCGCGATTTAGACTTG-TCCATCGGGTGGCATGGGAATATGGAACGAAATGC  441
            ||||||||||||||||| |||||| || ||||||||||||||||||||||||||| ||||
Sbjct  361  CAACACAACCGCGATTTGGACTTGGTC-ATCGGGTGGCATGGGAATATGGAACGACATGC  419

Query  442  ACGACTGGCTGCATCTGCGCCTTCGGCTCCTCCACTTCAACCGCCCATGTCTAGATTG  499
            |||||| ||||| ||| | ||||||||||||||||||||| | |||||||||||||||
Sbjct  420  ACGACTTGCTGCCTCTACACCTTCGGCTCCTCCACTTCAAGCACCCATGTCTAGATTG  477



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 25117073500


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5