BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg926152
Length=522
Score E
Sequences producing significant alignments: (Bits) Value
AT1G68660.1 | Symbols: | Ribosomal protein L12/ ATP-dependent ... 848 0.0
> AT1G68660.1 | Symbols: | Ribosomal protein L12/ ATP-dependent
Clp protease adaptor protein ClpS family protein | chr1:25777851-25779161
REVERSE LENGTH=765
Length=765
Score = 848 bits (459), Expect = 0.0
Identities = 502/523 (96%), Gaps = 2/523 (0%)
Strand=Plus/Plus
Query 1 CTGAGAAGCATCCACTCGACAATGGAGACTGCGATTTGTGGGAGATTAGCTCTCGCACCA 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 58 CTGAGAAGCATCCACTCGACAATGGAGACTGCGATTTGTGGGAGATTAGCTCTCGCACCA 117
Query 61 TCCTCTCTCTTCAATTCCAAATCAGGGGACAAACATTTAGTCTCAAAAGGACCATGTGTG 120
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 118 TCCTCTCTCTTCAATTCTAAATCAGGGGACAAACATTTAGTCTCAAAAGGACCATGTGTG 177
Query 121 AATCGTGGTGTTCTCATGACCTTGTCTACATAC-GCTGCATTAGGTAAAGGAGGTGGTGT 179
|||||| | ||||||||||||||||||||| | |||||||| |||||||||||||||||
Sbjct 178 AATCGTAGCATTCTCATGACCTTGTCTACAT-CTGCTGCATTGGGTAAAGGAGGTGGTGT 236
Query 180 CTTGGACAAACCAATTATAGAGAAAACCACTCCTGGTCGTGAATCCGAGTTTGATTTGAG 239
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 237 CTTAGACAAACCAATTATAGAGAAAACCACTCCTGGTCGTGAATCCGAGTTTGATTTAAG 296
Query 240 GAAATCAAAGAAGATGGCTCCACCTTACAGGGTGATACTACACAACGACAACTTCAACAA 299
||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 297 GAAATCAAAGAAGATAGCTCCACCTTACAGGGTGATACTACACAATGACAACTTCAACAA 356
Query 300 GAGGGAATATGTGGTTCAGGTGTTGATGAAGGTAATACCAGGCATGACTGTAGACAATGC 359
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 357 GAGGGAATATGTGGTTCAGGTGTTGATGAAGGTAATACCCGGCATGACTGTAGACAACGC 416
Query 360 GGTTAACATTATGCAAGAAGCCCACATCAACGGTTTGGCAGTTGTGATTGTCTGTGCTCA 419
||||||||||||||||||||| || |||||||||||||||||||||||||| ||||||||
Sbjct 417 GGTTAACATTATGCAAGAAGCTCATATCAACGGTTTGGCAGTTGTGATTGTTTGTGCTCA 476
Query 420 GGCCGATGCAGAGCAACACTGTATGCAGCTGCGGGGTAACGGCCTTCTTAGTTCTGTCGA 479
||| ||||||||||||||||||||||||||||| |||||||||||||| |||||||| ||
Sbjct 477 GGCTGATGCAGAGCAACACTGTATGCAGCTGCGCGGTAACGGCCTTCTCAGTTCTGTTGA 536
Query 480 ACCTGATGGTGGAGGCTGCTGATACTAATTAAACTCAGTATAG 522
|||||||||||||||||||||| ||||||||||||||||||||
Sbjct 537 ACCTGATGGTGGAGGCTGCTGAAACTAATTAAACTCAGTATAG 579
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 24966371059
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5