BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg926155
Length=1492
Score E
Sequences producing significant alignments: (Bits) Value
AT1G68690.1 | Symbols: | Protein kinase superfamily protein | ... 1777 0.0
AT1G26150.1 | Symbols: ATPERK10, PERK10 | proline-rich extensin... 822 0.0
> AT1G68690.1 | Symbols: | Protein kinase superfamily protein
| chr1:25788608-25792324 FORWARD LENGTH=3050
Length=3050
Score = 1777 bits (962), Expect = 0.0
Identities = 1127/1203 (94%), Gaps = 26/1203 (2%)
Strand=Plus/Plus
Query 268 GTTCTGATAATCCACCCCAAAACAACCCTACTCTTAGACCT-C-C-TGATAGCT-CAAAT 323
||||| | |||||| | |||||||||||||||||||||||| | | |||| ||| |||||
Sbjct 1333 GTTCTAACAATCCATCTCAAAACAACCCTACTCTTAGACCTCCTCTTGAT-GCTCCAAAT 1391
Query 324 TCTACTAATGGTAGCGGAATTGGTACTGGGGCTGTTGTTGGTATCAGTGTGGCAGTGGCA 383
||||||||| ||| |||||||||||||| |||||||||||||||||||| ||||| |||
Sbjct 1392 TCTACTAATAATAGTGGAATTGGTACTGGTGCTGTTGTTGGTATCAGTGTAGCAGTAGCA 1451
Query 384 CTTGTGGTGTTCACTCTTATTGGTATTTTTGTCTGGTGCGTGA-GAAGACGAGAAAAACG 442
|||||||| ||||||||| ||||||| |||||||||||| ||| ||| ||||||||||||
Sbjct 1452 CTTGTGGTCTTCACTCTTTTTGGTATCTTTGTCTGGTGCTTGAGGAA-ACGAGAAAAACG 1510
Query 443 ACTTTCAGCTGTTAGTGGTGGCGATGTTACGCCATCGCCAATGAGCTCTACCGCAAGATC 502
||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 1511 CCTTTCAGCTGTTAGTGGTGGCGATGTTACACCATCACCAATGAGCTCTACCGCAAGATC 1570
Query 503 AGATTCAGCtttttttAGGATGCAGTCATCTGCACCTGTTGTAG-GAGAAAAGCGTTCGG 561
||||||||| ||||||||||||||||||||||||||||||| || || ||||||||||
Sbjct 1571 AGATTCAGCATTTTTTAGGATGCAGTCATCTGCACCTGTTGGAGCAAG-CAAGCGTTCGG 1629
Query 562 GCAGTCATCAAACATATTTCTCACAATCACAATCTGGTGGCTTAGGCAATTCGAAAGCAT 621
|||| | || | ||||||||||| |||||||||||||||||||||||||
Sbjct 1630 GCAG---T------TA----T--CAATCACAATCCGGTGGCTTAGGCAATTCGAAAGCAT 1674
Query 622 TGTTTTCCTACGAAGAACTTGTGAAGGCAACAAATGGTTTTTCACAAGAAAATCTATTAG 681
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1675 TGTTTTCCTATGAAGAACTTGTGAAGGCAACAAATGGTTTTTCACAAGAAAATCTATTAG 1734
Query 682 GTGAAGGAGGATTTGGTTGTGTATATAAAGGGATATTACCGGATGGGAGAGTAGTTGCTG 741
||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1735 GTGAAGGTGGATTTGGTTGTGTATATAAAGGGATATTACCTGATGGGAGAGTAGTTGCTG 1794
Query 742 TCAAACAACTAAAGATCGGTGGAGGACAAGGTGACCGGGAGTTCAAAGCCGAAGTTGAAA 801
| ||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||
Sbjct 1795 TGAAACAACTAAAGATCGGTGGAGGACAAGGTGACAGGGAGTTTAAAGCCGAAGTTGAAA 1854
Query 802 CTCTTAGTAGAATTCATCACCGCCATTTGGTTTCAATCGTGGGACATTGTATCTCTGGTG 861
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1855 CTCTTAGCAGAATTCATCACCGCCATTTGGTTTCAATCGTGGGACATTGTATCTCTGGTG 1914
Query 862 ACCGCAGATTACTTATCTATGATTATGTCTCTAACAATGACCTTTACTTCCACCTTCATG 921
|||| ||||| ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1915 ACCGTAGATTGCTTATCTATGATTATGTTTCTAACAATGACCTTTACTTCCACCTTCATG 1974
Query 922 GAGAAAAATCTGTTCTGGACTGGGCAACACGTGTTAAAATTGCGGCTGGGGCGGCTCGTG 981
|||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1975 GAGAAAAATCTGTTCTAGACTGGGCAACACGTGTTAAAATTGCGGCTGGGGCAGCTCGTG 2034
Query 982 GACTAGCTTATCTCCATGAAGATTGTCACCCGCGTATCATTCACAGGGACATTAAGTCGT 1041
||||||||||||| |||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct 2035 GACTAGCTTATCTTCATGAAGATTGTCATCCGCGTATCATTCACAGGGACATCAAGTCGT 2094
Query 1042 CTAACATTCTTTTAGAGGACAACTTTGATGCTCGGGTCTCTGACTTTGGTCTTGCAAGAT 1101
||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 2095 CTAACATTCTTTTAGAGGACAACTTTGATGCTCGGGTTTCTGACTTTGGCCTTGCAAGAT 2154
Query 1102 TAGCTCTTGATTGTAACACTCATATCACCACACGGGTTATCGGAACGTTTGGCTACATGG 1161
||||||||||||||||||||||||||||||||||||| |||||||| |||||||| ||||
Sbjct 2155 TAGCTCTTGATTGTAACACTCATATCACCACACGGGTCATCGGAACATTTGGCTATATGG 2214
Query 1162 CTCCTGAATATGCATCAAGTGGAAAATTAACAGAGAAATCAGATGTATTCTCCTTTGGTG 1221
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 2215 CTCCTGAATATGCATCAAGTGGAAAATTAACAGAGAAATCAGATGTATTCTCCTTTGGGG 2274
Query 1222 TTGTTCTGCTCGAGTTAATCACTGGACGTAAACCGGTGGATACATCGCAACCACTGGGAG 1281
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2275 TTGTTCTGCTGGAGTTAATCACTGGACGTAAACCGGTGGATACATCGCAACCACTGGGAG 2334
Query 1282 ACGAGAGCCTTGTTGAATGGGCCCGGCCTCTGATAAGTCATGCCATAGAAACCGAGGAAT 1341
| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 2335 ATGAGAGCCTTGTTGAATGGGCCCGGCCTTTGATAAGTCATGCCATAGAAACCGAGGAAT 2394
Query 1342 TTGATTCTTTAGCAGATCCCAAGCTTGCG-GGAAACTATGTCGAATCTGAAATGTTTAGA 1400
||||||||||||||||||| ||||||| | ||||||||||| ||||||||||||||||||
Sbjct 2395 TTGATTCTTTAGCAGATCCTAAGCTTG-GAGGAAACTATGTAGAATCTGAAATGTTTAGA 2453
Query 1401 ATGATTGAAGCAGCGGGAGCCTGCGTGCGCCATTTAGCTACCAAGAGACCTCGGATGGGA 1460
|||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 2454 ATGATTGAAGCAGCAGGAGCCTGCGTGCGGCATTTAGCTACCAAGAGACCTCGGATGGGA 2513
Query 1461 CAA 1463
|||
Sbjct 2514 CAA 2516
Score = 298 bits (161), Expect = 1e-79
Identities = 240/275 (87%), Gaps = 18/275 (7%)
Strand=Plus/Plus
Query 1 TTGATTTGGTGATCGGAATTGAGATGGCAACGACACCGGTACAACCTCCGGTTTCAAATT 60
|||||||| |||||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 562 TTGATTTGTTGATCGGAATTGAGATGGCAACAACACCGGTTCAACCTCCGGTTTCAAATT 621
Query 61 CTCCACCGGTGGCTTCGCCGCCGCCACTGAATAATTCTACTCCAAGTAACAATGCTTCTT 120
||||||||||| ||||||||||| | | | | ||| | || |||||| |||
Sbjct 622 CTCCACCGGTGACTTCGCCGCCG-C-C-G-------CCACT----G-AATAATGCTACTT 666
Query 121 CTCCGGCTACACCACCACCGGTGACATCTCCGCTTCCTCCGTCAGCACCGCCACCAAATA 180
||||||||||||||||||| || ||||| ||||| |||||||||||||| ||||||||||
Sbjct 667 CTCCGGCTACACCACCACCAGTAACATCGCCGCTACCTCCGTCAGCACCTCCACCAAATA 726
Query 181 GAG-T--TCCTCCTCCTCCTCCGGTTACTATCTCACCACCACCAGTTACAAATGGAGCTC 237
||| | |||||||||||||||||| |||| |||||||||||||||| | ||||||||||
Sbjct 727 GAGCTCCTCCTCCTCCTCCTCCGGTGACTACCTCACCACCACCAGTTGCTAATGGAGCTC 786
Query 238 CTCCTCCTCCACTGCCAAAACCACCTGAGAGTTCT 272
||||||||||||||||||||||||||||||| |||
Sbjct 787 CTCCTCCTCCACTGCCAAAACCACCTGAGAGCTCT 821
> AT1G26150.1 | Symbols: ATPERK10, PERK10 | proline-rich extensin-like
receptor kinase 10 | chr1:9039628-9043288 REVERSE LENGTH=2866
Length=2866
Score = 822 bits (445), Expect = 0.0
Identities = 909/1129 (81%), Gaps = 48/1129 (4%)
Strand=Plus/Plus
Query 353 GGCTGTTGTTGGTATCAGT-GTGGCAGTGGCACTTGTGGTG-TTCACTCTTATTGGTA-T 409
||||||||| ||| | ||| ||| |||||| |||||| || || ||||| ||||| | |
Sbjct 1399 GGCTGTTGTGGGTGTAAGTATTGG-AGTGGCCCTTGTGCTGCTT-ACTCTCATTGG-AGT 1455
Query 410 TTTTGTCTGGTGCGT-GAGAAGACGAGAAAAACGA--CTTTCAGCTGTTAGTGGTGGCGA 466
| ||||||| ||| | |||| ||| |||||| || || ||| | || |||||||| |
Sbjct 1456 TGTTGTCTGTTGCTTAAAGAA-ACG-GAAAAA-GAGGCTCTCAACCATTGGTGGTGGCTA 1512
Query 467 TGTTACGCCATCGCCAAT-G-A-GCT-CTACCGCAAGATCAGATTCAGCtttttttAGGA 522
||||| |||| | || || | | || || || |||||||||||||||| || | | ||
Sbjct 1513 TGTTATGCCAACACCTATGGAATCCTCCT-CCCCAAGATCAGATTCAGCGCTTCTGAAGA 1571
Query 523 TGCAGTCATCTGCACCTGTTGTAGGAGAAAAGCGTTCGGGCAGTCATCAAACATATTTCT 582
||||||||| |||||| | || || | ||| ||||| ||| ||| ||||| || |
Sbjct 1572 CGCAGTCATCCGCACCTCTAGT-GG-G-AAATCGTTCTAGCA---ATCGTACATACTTAT 1625
Query 583 CACAATCACAATCTGGTGGCTTAGG-CAATTCGAAAGCATTGTTTTCCTACGAAGAACTT 641
|||||||| | ||||||| || || ||| |||| | | |||| || || |||||||||
Sbjct 1626 CACAATCAGAGCCTGGTGGTTTTGGTCAA-TCGAGGGAACTGTTCTCATATGAAGAACTT 1684
Query 642 GTGA-AGGCAACAAATGGTTTTTCACAAGAAAATCTATTAGGTGAAGGAGGATTTGGTTG 700
|| | | ||||||||||| || || | |||||||| || |||||||| ||||||||| |
Sbjct 1685 GTCATA-GCAACAAATGGATTCTCTGATGAAAATCTCTTGGGTGAAGGTGGATTTGGTCG 1743
Query 701 TGTATATAAAGGGA-TATTACCGGATGGGAGAGTAGTTGCTGTCAAACAACTAAAGATCG 759
||| |||||| ||| | ||||| |||| ||||| |||||||| |||||| |||| || |
Sbjct 1744 TGTGTATAAA-GGAGTTTTACCAGATGAAAGAGTGGTTGCTGTGAAACAATTAAAAATAG 1802
Query 760 GTGGAGGACAAGGTGACCGGGAGTTCAAAGCCGAAGTTGAAACTC-TTAGTAGAATTCAT 818
||||||||||||||||||| |||||||||||||| ||||| || | | || || | |||
Sbjct 1803 GTGGAGGACAAGGTGACCGAGAGTTCAAAGCCGAGGTTGATAC-CATAAGCAGGGTACAT 1861
Query 819 CACCGCCATTTGGTTTCAATCGTGGGACATTGTATCTCTGGTG-ACCGCAGATTACTTAT 877
||||| ||||| |||| || || ||| | || || || | | |||| ||||| |||||
Sbjct 1862 CACCGGAATTTGCTTTCTATGGTTGGATACTGCATTTC-CGAGAACCGGAGATTGCTTAT 1920
Query 878 CTATGATTATGTCTCTAACAATGACCTTTACTTCCACCTTCATG--G-AGAAAAAT-CTG 933
|||||||||||| ||||||| ||||||||||||| ||||| | | || || | | |
Sbjct 1921 TTATGATTATGTCCCTAACAACAACCTTTACTTCCATCTTCACGCCGCAG-GAACTCCGG 1979
Query 934 TTCTGGACTGGGCAACACGTGTTAAAATTGCGGCTGGGGCGGCTCGTGGACTAGCTTATC 993
||| |||||||||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 1980 GTCTAGACTGGGCAACACGTGTTAAAATTGCTGCTGGTGCGGCTCGTGGACTAGCTTATC 2039
Query 994 TCCATGAAGATTGTCACCCGCGTATCATTCACAGGGACATTAAGTCGTCTAACATTCTTT 1053
||||||||||||||||||| |||||||| || |||||||| || || || |||||||| |
Sbjct 2040 TCCATGAAGATTGTCACCCTCGTATCATACATAGGGACATCAAATCATCCAACATTCTCT 2099
Query 1054 TAGAGGACAACTTTGATGCTCGGGTCTCTGACTTTGGTCTTGCAA-GATTAGCTCTTGAT 1112
|||| | ||||| |||| | ||| |||||||| || ||||||| | | |||||| ||
Sbjct 2100 TAGAAAATAACTTCCATGCCCTGGTTTCTGACTTCGGCCTTGCAAAGCT-AGCTCTCGAC 2158
Query 1113 TGTAACACTCATATCACCACACGGGTTATCGGAACGTTTGGCTACATGGCTCCTGAATAT 1172
|||||||| ||||| || || ||||| || ||||| || |||||||||||||| ||||||
Sbjct 2159 TGTAACACACATATTACAACTCGGGTCATGGGAACATTCGGCTACATGGCTCCGGAATAT 2218
Query 1173 GCATCAAGTGGAAAATTAACAGAGAAATCAGATGTATTCTCCTTTGGTGTTGTTCTGCTC 1232
||||||||||| |||||||| ||||||||||| |||||||||||||| |||||||| ||
Sbjct 2219 GCATCAAGTGGCAAATTAACCGAGAAATCAGACGTATTCTCCTTTGGGGTTGTTCTACTG 2278
Query 1233 GAGTTAATCACTGGACGTAAACCGGTGGATACATCGCAACCACTGGGAGACGAGAGCCTT 1292
|||||||||||||||||||| || |||||| |||| ||||| |||||||| |||||||||
Sbjct 2279 GAGTTAATCACTGGACGTAAGCCTGTGGATGCATCCCAACCTCTGGGAGATGAGAGCCTT 2338
Query 1293 GTTGAATGGGCCCGGCCTCTGATAAGTCATGCCA-TAGAAACCGAGGAATTTG-ATTCTT 1350
||||||||||| || ||| || | ||| |||||| | |||||||| || ||| | |||
Sbjct 2339 GTTGAATGGGCTCGTCCTTTGCTTAGTAATGCCACT-GAAACCGAAGAGTTTACAG-CTT 2396
Query 1351 TAGCAGATCCCAAGCTTGCGG-GAAACTATGTCGAATCT-GAAATGTTTAGAATGATTGA 1408
|||||||||||||||| | | |||||||||| | | | ||||||||||||||||||||
Sbjct 2397 TAGCAGATCCCAAGCTAG-GTAGAAACTATGTTGG-TGTTGAAATGTTTAGAATGATTGA 2454
Query 1409 AGCAGCGGGAGCCTGCGTGCGCCATTTAGCTACCAAGAGACCTCGGATG 1457
|||||||| ||| || | ||||||| |||||| |||||||| || |||
Sbjct 2455 AGCAGCGGCAGCTTGTATTCGCCATTCAGCTACAAAGAGACCCCGAATG 2503
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73593998970
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5