BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg926161
Length=265
Score E
Sequences producing significant alignments: (Bits) Value
AT1G68735.1 | Symbols: | Encodes a defensin-like (DEFL) family... 305 1e-82
> AT1G68735.1 | Symbols: | Encodes a defensin-like (DEFL) family
protein. | chr1:25811903-25812261 FORWARD LENGTH=225
Length=225
Score = 305 bits (165), Expect = 1e-82
Identities = 206/225 (92%), Gaps = 6/225 (3%)
Strand=Plus/Plus
Query 24 TCTAAAGCTTCCGTTCTTGCTATCTTCATGGTCGTCCTTGTTCTAGGACTGGTGATAAA- 82
|||||| || ||||||||||||||||||| | |||||| |||||||| |||||||||||
Sbjct 4 TCTAAAACTCCCGTTCTTGCTATCTTCAT-G-CGTCCTCGTTCTAGGGCTGGTGATAAAT 61
Query 83 GGA-GACGCAAGGACAAGAACTGTGTCATGAATATTTTCAGTTAACCGCACCATGTGAAA 141
| | | |||||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 62 TTATGTCACAAGGACAAGAACTGTGTCATGAATATTTTCAATTAACAGCACCATGTGAAA 121
Query 142 AACAA-CAGTGTATCGATATGTGTAGTTCGAAGTACAAGACTGGAAAAGGCGTTTGCGGG 200
| ||| || ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 122 AGCAACCA-TGTATTGATATGTGTAGTTCGAAGTACAAGACTGGAAAAGGCGTTTGCGGG 180
Query 201 CCAGCGGTCCATCAATGCTTCTGCACTTTTAGTTGCACAGTTTAA 245
|||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 181 CCAGCGGTACATCAATGCTTCTGCACTTTTAGTTGCACAGTTTAA 225
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 12114527509
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5