BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg926180

Length=503
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G68875.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...   721    0.0  


> AT1G68875.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: biological_process unknown; 
LOCATED IN: endomembrane system; EXPRESSED IN: petal, leaf 
whorl, sepal, flower, stamen; EXPRESSED DURING: 4 anthesis, 
petal differentiation and expansion stage; Has 4 Blast hits 
to 4 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa 
- 0; Fungi - 0; Plants - 4; Viruses - 0; Other Eukaryotes 
- 0 (source: NCBI BLink). | chr1:25892086-25892798 FORWARD 
LENGTH=713
Length=713

 Score =  721 bits (390),  Expect = 0.0
 Identities = 466/502 (93%), Gaps = 7/502 (1%)
 Strand=Plus/Plus

Query  6    ACCAAAATAAGCAAAAATGACAGAACTCAAAAGGATATGTATTTCATTCTCACTAACACT  65
            ||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct  12   ACCAAAAGAAGCAAAAATGACAGAACTCAAATGGATATGTATTTCATTCTCACTAACACT  71

Query  66   -TT--TACTCTTAGCCGTTGAAGGAGCCCTTAACATAAACCAGAAATGGTCTGGTGGAAG  122
             ||  ||  |||||| |||||||||||| |||||||||||||||||||||||||||||||
Sbjct  72   CTTGCTAAGCTTAGCAGTTGAAGGAGCCTTTAACATAAACCAGAAATGGTCTGGTGGAAG  131

Query  123  TCATTTTGGTTACGAGGGTGGGTTCTGTTTTCCCGGTCTCTGCATTGGAGGATCTGGTGG  182
            |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct  132  TCATTTTGGTTACGAGGGCGGGTTCTGTTTTCCCGGTCTCTGCATTGGAGGATCTGGTGG  191

Query  183  TAGCAGAGTCCATTATGGCAGGGACCGTTACGGTGGCCGAAATCAATATAGAGGTGGTAG  242
            ||| |||||||||||||||||||||| |||||||||  ||| ||||||||||||||||| 
Sbjct  192  TAGTAGAGTCCATTATGGCAGGGACCATTACGGTGGTGGAAGTCAATATAGAGGTGGTAT  251

Query  243  TGGTTTCAGAGAGACCATGTACTGCAAACCGTTGTCTTGTTATGGTGGCTCATGTGATGC  302
            ||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct  252  TGGTTACAGAGAGACCATGTACTGCAAACCGTTGACTTGTTATGGTGGCTCATGTGATGC  311

Query  303  ACTCCATTTACATTTAGACAAAGGGTTGTATGAATCTCTCGTACGCAACACAAAGACAGC  362
            ||||||||| ||||||||||||||||| |||||||||||| ||||||| || ||||||||
Sbjct  312  ACTCCATTTGCATTTAGACAAAGGGTTATATGAATCTCTCATACGCAATACTAAGACAGC  371

Query  363  GAAACAACCGTCGACTGTTGATTACAACATCCCAGAGACCTTGAAACACAATGTCATCAT  422
            ||||||| ||||||||||||||| |||||| |||||||| ||||||||||||||||||| 
Sbjct  372  GAAACAATCGTCGACTGTTGATTTCAACATGCCAGAGACTTTGAAACACAATGTCATCAA  431

Query  423  CAACAGAAACTATGAGTTCAAGATGGTGAAAGAAGCTGCAATGGCACCACAGTCTAACTA  482
            ||| | |  ||||||||| ||||||| |||||||||||||||||||||||||||||||||
Sbjct  432  CAATA-A--CTATGAGTTTAAGATGGCGAAAGAAGCTGCAATGGCACCACAGTCTAACTA  488

Query  483  GCTAGCTAAAGAAGTT-AGTCT  503
            ||||||||| |||||| |||||
Sbjct  489  GCTAGCTAATGAAGTTGAGTCT  510



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 24011922266


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5