BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg926190

Length=866
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G68940.3 | Symbols:  | Armadillo/beta-catenin-like repeat fa...   211    8e-54


> AT1G68940.3 | Symbols:  | Armadillo/beta-catenin-like repeat 
family protein | chr1:25921453-25925845 REVERSE LENGTH=3525
Length=3525

 Score =  211 bits (114),  Expect = 8e-54
 Identities = 132/140 (94%), Gaps = 3/140 (2%)
 Strand=Plus/Minus

Query  76   TCTT-AC-CGACATCCCATTTGTTCAAAGATGGTCTTGTCTCACTCTGCTTACCAAGTCT  133
            |||| || ||||||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct  194  TCTTGACTCGACATCCCATTTGTTCAAAGCTGGTCTTGTCTTACTCTGCTTACCAAGTCT  135

Query  134  CCAACAGTTAACTTCATCTAGCAAAAGACTTGAAGGACACACTTGGTCCTCTGTTTCAGA  193
            ||||| | |||||||||| |||| ||||||||||||||||||||||||||||||||||||
Sbjct  134  CCAACTG-TAACTTCATCAAGCAGAAGACTTGAAGGACACACTTGGTCCTCTGTTTCAGA  76

Query  194  GAAGTTGGAACCCACTAAAG  213
            ||||||||||||||||||||
Sbjct  75   GAAGTTGGAACCCACTAAAG  56



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 42246917627


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5