BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg926191
Length=1168
Score E
Sequences producing significant alignments: (Bits) Value
AT1G68960.1 | Symbols: | Protein of unknown function (DUF295) ... 1602 0.0
> AT1G68960.1 | Symbols: | Protein of unknown function (DUF295)
| chr1:25929896-25931257 FORWARD LENGTH=1292
Length=1292
Score = 1602 bits (867), Expect = 0.0
Identities = 1078/1178 (92%), Gaps = 21/1178 (2%)
Strand=Plus/Plus
Query 2 AAATTAGGGTTTTACAACAATGTCTCAGCTTTTGTTGTGCCGAATCTCAAAGCTCTCATC 61
|||||||||||||| |||||||||||||| | |||||||||||||| ||||| ||| |
Sbjct 29 AAATTAGGGTTTTAAAACAATGTCTCAGC---TCTTGTGCCGAATCTCGAAGCTTTCAAC 85
Query 62 AGCCCGGAACCA-TTTCCTCTGTTTCCGACGGTCAAAATTCTCTACGGCCACGGCGGCGG 120
| ||||||| || ||||||||||||||||||| |||||||||||| |||||||| ||
Sbjct 86 ATCCCGGAA-CAGGATCCTCTGTTTCCGACGGTCCGAATTCTCTACGGTCACGGCGGAGG 144
Query 121 C-A--ACACCTTACCTCCTCCTCGGCGA-CGATGTTGTCGGAATATCTCCTTGCGGTGGA 176
| | |||||||| || ||||||||| | |||| ||||||||| ||||||||||| |||
Sbjct 145 CAACGACACCTTATCTTCTCCTCGGC-AGCGATCTTGTCGGAAAATCTCCTTGCGATGGG 203
Query 177 AAAGTTGTCAACTTTAACCTATACGATCCGAGG-AGACAAGAGCAAGTGAAGATCGAAAA 235
||||| |||||||||||||| ||||| || ||| || |||||||||||||||||||||||
Sbjct 204 AAAGTCGTCAACTTTAACCTCTACGACCCAAGGAAG-CAAGAGCAAGTGAAGATCGAAAA 262
Query 236 CAAGATTTTATCAAAGGAGGTCTATAAATCTCGTAGGATAGGATCATCAAGAGGATGGTT 295
||||||| |||||||||| ||||| |||| | | | ||||||| ||| ||||||||||
Sbjct 263 CAAGATTCTATCAAAGGAAGTCTACGAATCCCACAAGTTAGGATCCTCACGAGGATGGTT 322
Query 296 AGCTTTGGTGAACAAGAAAGATTCAACAGTGCGTCTCACTAACATCTTAAACCCTTCGAA 355
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 323 AGCTTTGTTGAACAAGAAAGATTCAACAGTGCGTCTCACTAACATCTTAAACCCTTCTAA 382
Query 356 GAAGATCATTTCTTTACCTCCAATAACCAGAGACAAATATGAA-CACCATGTTAATGTCT 414
||| ||||| ||||||||| || |||||||||||||||||||| | ||||||||||||||
Sbjct 383 GAAAATCATATCTTTACCTTCACTAACCAGAGACAAATATGAATC-CCATGTTAATGTCT 441
Query 415 CTGTCTCATCTTCAAATGAAGAAGACTGTGTTGTCGCCGTCAAGTTTTACGGGTCACGAG 474
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 442 CTGTCTCATCTTCAAATGAAGAAGACTGTGTGGTCGCCGTCAAGTTTTACGGGTCACGAG 501
Query 475 TCAGTCTTTGTCGAACTGGTGACTCCGAGTGGACTCGCATCAACGTGCCTTGCCCATCTT 534
| |||||||||||| ||||||||||||||||||||||||| |||||||||| |||||||
Sbjct 502 TTAGTCTTTGTCGACCTGGTGACTCCGAGTGGACTCGCATTGACGTGCCTTGTCCATCTT 561
Query 535 TCCATTCTTCTACCGTCATTTACTCGGAGAGAGACCGGAGATTTTACTTGAACAATTGTA 594
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 562 TCCATTCTTCTACCGTCATTTACTCGGAGAGAGACCGGAGATTTTACTTGAACAATTGTA 621
Query 595 ACCCTGACTACACTGGTCCAACAGATTTCACACCGAAAACCGGTTTTCCCACTCCGGTTA 654
|||||||||| || ||||| || ||||||||||||||| ||||||| | |||||||||||
Sbjct 622 ACCCTGACTATACCGGTCCGACCGATTTCACACCGAAATCCGGTTTACACACTCCGGTTA 681
Query 655 GTGGCTACAAGAGATTCCTCTTCTCTAACTTTCTTGACGAATTACCAGAGTTGAAGAACG 714
||||||||||||||||||||||||||||||||||||| ||| | ||||||||| ||||||
Sbjct 682 GTGGCTACAAGAGATTCCTCTTCTCTAACTTTCTTGAAGAAATGCCAGAGTTGGAGAACG 741
Query 715 AAATGCGTCTCTCTCGTTTCAGGATCCAACAACAACTAGTCGAGTCAGCTTCGGGCCAAT 774
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 742 AAAGGCGTCTCTCTCGTTTCAGGATCCAACAACAACTAGTCGAGTCAGCTTCGGGCCAAT 801
Query 775 CCTTCATCGTTGCATGGTTTGTGGAGAGAT-TTACGGACAAAGGAGAAGTTGCGACATGG 833
|||||||||||||||||||||| ||||| | |||||||||||||||||||||||||||||
Sbjct 802 CCTTCATCGTTGCATGGTTTGTTGAGAG-TCTTACGGACAAAGGAGAAGTTGCGACATGG 860
Query 834 GGAGACGCACGTTACA-TAAACAGA-AAAGACCTTTGCAGGAAGACCCACAAGATCATGG 891
|||||| ||||||||| ||| || | ||||||||||||| ||||||||||||||||||||
Sbjct 861 GGAGACACACGTTACAATAA-CA-ACAAAGACCTTTGCAAGAAGACCCACAAGATCATGG 918
Query 892 TGTTTCGGCAAGACGAAGAGCAAGGGATTGGTCCTTATACCGATGACATTGGCGATCTCT 951
|| || ||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 919 TGATTAGGCAAGACGAAGAGCAAGGGATTGGTCCTTACACCGATGACATTGGCGATCTCT 978
Query 952 GCATTTTCTTGGGCGAGAATGAATCTTTCTGTCTCTCTGCCAAGGACTTCCCTGGTCTTA 1011
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 979 GCATTTTCTTGGGCGAGAATGAATCTTTCTGTCTCTCTGCTAAGGACTTCCCTGGTCTTA 1038
Query 1012 ACCCTAACTCTGTCTACTTTGCTGGACATAGTTCCGGTTTTGGCATATGTGATCTCGCCT 1071
|||||||||| ||||||||||| || ||| ||||||||| ||||||||| ||||||||||
Sbjct 1039 ACCCTAACTCAGTCTACTTTGCCGGCCATGGTTCCGGTTATGGCATATGGGATCTCGCCT 1098
Query 1072 CTCGCACCATACGTTATCTCTCCGACTCTACTCCACCACCCGGTCGCATGTTTTGGCTTC 1131
|| ||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1099 CTTGCACCATTCGTTATCTCTCTGACTCTACTCCACCACCCGGTCGCATGTTTTGGCTTC 1158
Query 1132 CTCCCACAATGTGCTAATAAGAGAGAAGGTTT-TTGTC 1168
|||||||||| | | |||| |||||||| | | |||||
Sbjct 1159 CTCCCACAATATCCCAATAGGAGAGAAGATATCTTGTC 1196
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57329022390
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5