BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg926196
Length=1005
Score E
Sequences producing significant alignments: (Bits) Value
AT1G69030.1 | Symbols: | BSD domain-containing protein | chr1:... 1471 0.0
> AT1G69030.1 | Symbols: | BSD domain-containing protein | chr1:25947265-25949262
REVERSE LENGTH=1118
Length=1118
Score = 1471 bits (796), Expect = 0.0
Identities = 927/988 (94%), Gaps = 18/988 (2%)
Strand=Plus/Plus
Query 23 ATGGAAGATCTGTGGAAGAGAGCGAAATCATTTGCAGAAGAAGCAGCGAAGAAATCACAA 82
||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1 ATGGAAGATCTATGGAAGAGAGCGAAATCGTTTGCAGAAGAAGCAGCGAAGAAATCACAA 60
Query 83 ACCATAACACTACAATCATCTTCAACAACCTTCGTCAATCTCGTCTCCGAAACCGCTAAA 142
||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||
Sbjct 61 ACCATAACACTACAATCATCTTCAACAACATTCGTCAATCTCGTCACCGAAACCGCTAAA 120
Query 143 AAATCCAAAGAGTTCGCTCTCGAAGCTTCTAAGAAAGCCGATTCGCTCAATGTCTCCGAA 202
|||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||
Sbjct 121 AAATCCAAAGAGTTCGCTCTCGAAGCTTCTAAGAAAGCTGATTCGATCAATGTCTCCGAG 180
Query 203 TTTGTAGCCGAGACGGCGAAGAAATCTAAGGAATTCGCCGCCGAGGTTTCAACGAAAGCG 262
|| || ||||||||||||||||| || ||||||||||| || ||||||||||||||||||
Sbjct 181 TTCGTCGCCGAGACGGCGAAGAAGTCAAAGGAATTCGCTGCTGAGGTTTCAACGAAAGCG 240
Query 263 GATCAGCTTAAAGTCGTTGCGTTGAAACAAGCTGATCAGATCCAGAATATTAAATCGATT 322
|||||||| |||||||| || ||||||||||||||||||||||||||||| |||||||||
Sbjct 241 GATCAGCTCAAAGTCGTAGCATTGAAACAAGCTGATCAGATCCAGAATATAAAATCGATT 300
Query 323 GCCGACATTATACCTGGAGGATT---AGGATCAGGATCTGGTGGTGGTGGTTCTGTGATC 379
||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 301 GCCGACATTATACCTGGAGGATTAGGAGGATCAGGATCTGGTGGTGGTGGTTCTGAGATT 360
Query 380 TCTGAATCTGAGCTTGTTAGCTTTGGTATTACTGATGATTTGAGAGAGTTTGTTAAAGGT 439
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 361 TCTGAATCTGAGCTTGTTAGTTTTGGTATTACTGATGATTTGAGAGAGTTTGTTAAAGGT 420
Query 440 TTGACATCTGCTACGTTTCAGGCTTTTCCTGTACAAGATGAATCGTCGGAAGTTTCTGAT 499
||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||
Sbjct 421 TTGACATCTGCTACGTTCCAGGCTTTTCCTGAACAAGATGAATCGTCGGAAGTTTCTGAT 480
Query 500 TTGGAAACTAGTGCGTCGAATGTTCGGAAGGATCTTTCTGAGTGGCAGGAGAGACATGCC 559
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 TTGGAAACAAGTGCGTCGAATGTTCGGAAGGATCTTTCTGAGTGGCAGGAGAGACATGCC 540
Query 560 ACTCTTGTTCTTGGTTCCGTTAAGCAAATTTCGAAGTTGAGATATGAATTATGCCCGCGA 619
||||||||||||||||| || ||||||||||||||||||||||||||| ||||||| |||
Sbjct 541 ACTCTTGTTCTTGGTTCTGTCAAGCAAATTTCGAAGTTGAGATATGAACTATGCCCACGA 600
Query 620 GTGATGAAAGAAAGGAGGTTCTGGAGGATATACTTTACCTTAGTGAGCACTCATGTTGCA 679
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 GTTATGAAAGAAAGGAGGTTCTGGAGGATATACTTTACCTTAGTGAGCACTCATGTTGCA 660
Query 680 CCATATGAGAGAAAGTACATGGAGGAACTTAGGAGCAAAGCAGAGAGTAAAGATGAAGAA 739
|||||||| || |||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 661 CCATATGAAAGGAAGTACATGGAGGAACTTAGGAACAAAGCAGAGAGTAAAGATGAAGAA 720
Query 740 GCTAAGAAGAGTCCAGGGGTTGGAGGGACAGAATTAGCTGAAAAGAACGTGACAATGAAC 799
|||||||||||||||||| ||||| ||||||||| ||||||||||||| || | | |
Sbjct 721 GCTAAGAAGAGTCCAGGGCTTGGAAGGACAGAATCAGCTGAAAAGAACA-GA-A-T-A-- 774
Query 800 AGAACATCTACTGCATCATCTGAGCAAGATCTCGATACATTCCTTCTGGGAGATCTAGAA 859
||||||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct 775 ------TCTACTGCATCGTCTGAGCAAGATCTCGATACATTCCTGCTGGGAGATCTAGAA 828
Query 860 GACAGCGACGAAGCTCCtgatgatggtgatggtgatgatg-atggaagcttgggtgatga 918
||||| |||||||||||||||||||||||||||||||||| | |||||| ||||||||||
Sbjct 829 GACAGTGACGAAGCTCCTGATGATGGTGATGGTGATGATGGA-GGAAGCCTGGGTGATGA 887
Query 919 tgaCTTTGACAAGATTGGCAACTCTGATGTTGAAGAAGAGAAAGAAACAAATGCAGCAAA 978
||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||
Sbjct 888 TGACTTTGACAAGATTGGCAACTCTGATGTTGAGGAAGAGAAAGAATCAAATGCAGCAAA 947
Query 979 AAATTAGAGATAT-ATTAAGTTTGGTTA 1005
|||||||| |||| ||||||||| ||||
Sbjct 948 AAATTAGAAATATTATTAAGTTTTGTTA 975
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49229464060
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5