BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg926202

Length=915
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G51690.1 | Symbols: ACS12 | 1-amino-cyclopropane-1-carboxyla...   632    2e-180
  AT3G02530.1 | Symbols:  | TCP-1/cpn60 chaperonin family protein...   182    7e-45 
  AT5G16070.1 | Symbols:  | TCP-1/cpn60 chaperonin family protein...   154    1e-36 
  AT1G05490.1 | Symbols: chr31 | chromatin remodeling 31 | chr1:1...   117    2e-25 


> AT5G51690.1 | Symbols: ACS12 | 1-amino-cyclopropane-1-carboxylate 
synthase 12 | chr5:20997413-21001046 REVERSE LENGTH=3179
Length=3179

 Score =  632 bits (342),  Expect = 2e-180
 Identities = 399/427 (93%), Gaps = 2/427 (0%)
 Strand=Plus/Plus

Query  111  TCTTCGTCGGCTCTCTCATTCCTTGTTGTCTCTTCTACTTTCTCCAGCTTTACCTAAAAC  170
            ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct  139  TCTTCGTCGGCTCTCTCATTCCTTGTTGTCTCTTCTACTTTCTCCAGCTCTACCTTAAAC  198

Query  171  GATC-CCGTCCTCCTCCCTCCAACCCGACGGAGTTACCGAGAACGTCGTCACGGACTAAT  229
            || | |||||||||||||||| |||||||||| ||||||||||| |  ||||||||||||
Sbjct  199  GA-CGCCGTCCTCCTCCCTCCGACCCGACGGACTTACCGAGAACTTTTTCACGGACTAAT  257

Query  230  CTCTTCTCTCGTGGAAACTCGATCGGACGAGTTCGAGTCTCCTCTCGAGCTGTTCCTCTG  289
            ||||||||||| || ||||||||||||||||||||||||||||| ||||| |||||| | 
Sbjct  258  CTCTTCTCTCGCGGGAACTCGATCGGACGAGTTCGAGTCTCCTCCCGAGCAGTTCCTGTA  317

Query  290  GCGAAACCTTCCGATTCGCCTTATTACATTGGGTTGGAGAGAGTCAAGACGGATCCGTAC  349
            || |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct  318  GCTAAACCTTCCGATTCGCCTTATTACATTGGGTTGGAGAGAGTCAAAACGGATCCGTAC  377

Query  350  GATCGGATTAAGAACACGGACGGGATTATTCAGCTTGGATTAGCTGAGAGTACACTGTGC  409
            |||||||||| ||||||||| ||||||||||||||||||||||| |||||||| ||||||
Sbjct  378  GATCGGATTACGAACACGGATGGGATTATTCAGCTTGGATTAGCCGAGAGTACGCTGTGC  437

Query  410  TTTGACTTGCTACAGAGATGGATGTCTGAGAATTTGATGGAGTCGATGATGCAATCTGAT  469
            |||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct  438  TTTGACTTGCTACAGAGATGGATGTCAGAGAATTTGATGGAGTCAATGATGCAATCTGAT  497

Query  470  GATGGTAAATTCGATATTAGTAGTATCGCAATGTATAAACCTATTGAAGGATTACTGGAA  529
            |||||| |||| ||||||||||||||||| |||||||||||| ||||||||||||| |||
Sbjct  498  GATGGTGAATTTGATATTAGTAGTATCGCCATGTATAAACCTTTTGAAGGATTACTTGAA  557

Query  530  CTCAGAG  536
            |||||||
Sbjct  558  CTCAGAG  564


> AT3G02530.1 | Symbols:  | TCP-1/cpn60 chaperonin family protein 
| chr3:528574-532582 REVERSE LENGTH=1965
Length=1965

 Score =  182 bits (98),  Expect = 7e-45
 Identities = 110/116 (95%), Gaps = 0/116 (0%)
 Strand=Plus/Plus

Query  673   GATAATCGCTCTTAGAAGAGCAAAGAGGAGGAACATGGAACTTTTGGTTTTGGCATGTGG  732
             ||||||||| |||||||| |||||||||||||||||||||| ||||||||||||||||||
Sbjct  1061  GATAATCGCCCTTAGAAGGGCAAAGAGGAGGAACATGGAACGTTTGGTTTTGGCATGTGG  1120

Query  733   TGGAGAAGCTGTGAACTCTGTTGATGACTTGACCCCTGATTCTCTTTGTTGGGCTG  788
             ||||||||||||||||||||| ||||||||||||||||||| |||| |||||||||
Sbjct  1121  TGGAGAAGCTGTGAACTCTGTCGATGACTTGACCCCTGATTGTCTTGGTTGGGCTG  1176


> AT5G16070.1 | Symbols:  | TCP-1/cpn60 chaperonin family protein 
| chr5:5247354-5251179 REVERSE LENGTH=1932
Length=1932

 Score =  154 bits (83),  Expect = 1e-36
 Identities = 99/107 (93%), Gaps = 0/107 (0%)
 Strand=Plus/Plus

Query  682   TCTTAGAAGAGCAAAGAGGAGGAACATGGAACTTTTGGTTTTGGCATGTGGTGGAGAAGC  741
             |||||||||||||||||||||||||||||||| ||| |||||||| ||||||||||||||
Sbjct  1071  TCTTAGAAGAGCAAAGAGGAGGAACATGGAACGTTTAGTTTTGGCCTGTGGTGGAGAAGC  1130

Query  742   TGTGAACTCTGTTGATGACTTGACCCCTGATTCTCTTTGTTGGGCTG  788
             |||||| |||||||| |||||||||||||| |||||| | |||||||
Sbjct  1131  TGTGAATTCTGTTGACGACTTGACCCCTGAGTCTCTTGGATGGGCTG  1177


> AT1G05490.1 | Symbols: chr31 | chromatin remodeling 31 | chr1:1618602-1623452 
REVERSE LENGTH=4600
Length=4600

 Score =  117 bits (63),  Expect = 2e-25
 Identities = 79/86 (92%), Gaps = 4/86 (5%)
 Strand=Plus/Plus

Query  792   TTTTCAGTTCAGAGAAAGCAAAAG----ACAAGCACCTAAAATGCCATCAAGACCTGAAA  847
             ||||||||||||||||||||||||    ||||| |||| |||||||||||| ||||||||
Sbjct  1715  TTTTCAGTTCAGAGAAAGCAAAAGAAATACAAGTACCTGAAATGCCATCAATACCTGAAA  1774

Query  848   TCCAGAATTCAGAGAAAGCAAAAGAG  873
             ||||||||||||||||||||||||||
Sbjct  1775  TCCAGAATTCAGAGAAAGCAAAAGAG  1800



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 44708390830


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5